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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1mcz:A (2.8) BS04 RMN 4.1.1.7 GO:0000287 ... P20906 12590569 PDBbind: -logKd/Ki=3.00, Ki=1mM
    2 1mcz:A (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569 PDBbind: -logKd/Ki=3.00, Ki=1mM
    3 1mcz:B (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569 PDBbind: -logKd/Ki=3.00, Ki=1mM
    4 1mcz:B (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569 PDBbind: -logKd/Ki=3.00, Ki=1mM
    5 1mcz:C (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    6 1mcz:C (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    7 1mcz:D (2.8) BS02 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    8 1mcz:D (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    9 1mcz:E (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    10 1mcz:E (2.8) BS05 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    11 1mcz:F (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    12 1mcz:F (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    13 1mcz:G (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    14 1mcz:G (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    15 1mcz:H (2.8) BS02 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    16 1mcz:H (2.8) BS05 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    17 1mcz:I (2.8) BS04 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    18 1mcz:I (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    19 1mcz:J (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    20 1mcz:J (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    21 1mcz:K (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    22 1mcz:K (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    23 1mcz:L (2.8) BS02 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    24 1mcz:L (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    25 1mcz:M (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    26 1mcz:M (2.8) BS05 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    27 1mcz:N (2.8) BS02 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    28 1mcz:N (2.8) BS05 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    29 1mcz:O (2.8) BS03 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    30 1mcz:O (2.8) BS05 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    31 1mcz:P (2.8) BS02 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    32 1mcz:P (2.8) BS06 RMN 4.1.1.7 GO:0000287 ... P20906 12590569
    33 1mdl:A (1.85) BS02 RMN 5.1.2.2 GO:0000287 ... P11444 7893690 PDBbind: -logKd/Ki=3.09, Ki=810uM
    BindingDB: Ki=810000nM
    34 3zgj:A (1.95) BS02 RMN 1.13.11.46 GO:0003868 ... Q9Z4X7 23881738
    35 3zgj:B (1.95) BS02 RMN 1.13.11.46 GO:0003868 ... Q9Z4X7 23881738
    36 4p56:A (1.9) BS01 RMN ? GO:0055085 ... A0A0H3LM73 25540822
    37 4p56:C (1.9) BS01 RMN ? GO:0055085 ... A0A0H3LM73 25540822
    38 5zzx:A (1.49) BS02 RMN 1.1.3.46 GO:0004459 ... O52792 31373572
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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