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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3l2v:A (3.2) BS06 RLT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 20118915
    2 3oya:A (2.65) BS06 RLT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 21030679
    3 4mda:A (1.7) BS03 RLT 3.1.-.- GO:0003676 ... Q7JQ07 24397848
    4 4mdb:A (1.7) BS01 RLT 3.1.-.- GO:0003676 ... Q7JQ07 24397848
    5 7lw6:A (2.38) BS01 RLT ? GO:0003723 ... C6H0Y9 36603507
    6 7m0n:A (2.4) BS01 RLT ? GO:0003723 ... C6Y633 36603507
    7 7m0n:B (2.4) BS01 RLT ? GO:0003723 ... C6Y633 36603507
    8 7m0n:C (2.4) BS01 RLT ? GO:0003723 ... C6Y633 36603507
    9 7m0n:D (2.4) BS01 RLT ? GO:0003723 ... C6Y633 36603507
    10 7oug:B (3.1) BS07 RLT ? GO:0003676 ... Q4QY51 34404793
    11 7oug:E (3.1) BS07 RLT ? GO:0003676 ... Q4QY51 34404793
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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