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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m4g:A (1.8) BS02 RIO 2.3.1.- GO:0005886 ... P9WQG9 12161746
    2 1m4g:B (1.8) BS02 RIO 2.3.1.- GO:0005886 ... P9WQG9 12161746
    3 1s3z:A (2.0) BS02 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    4 1s3z:A (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    5 1s3z:B (2.0) BS01 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    6 1s3z:B (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    7 2bue:A (1.7) BS02 RIO 2.3.1.82 GO:0016410 ... Q6SJ71 18710261
    8 5iqd:A (2.2) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    9 5iqd:B (2.2) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    10 5iqd:C (2.2) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    11 5iqd:D (2.2) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    12 6c5u:A (2.41) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    13 6c5u:B (2.41) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    14 6c5u:D (2.41) BS02 RIO 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    15 6s0s:A (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    16 6s0s:B (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    17 6s0s:C (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    18 6s0s:D (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    19 6s0s:E (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    20 6s0s:F (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    21 7mql:A (1.6) BS02 RIO 2.3.1.81 GO:0008080 ... P29808 35921328
    22 7mql:B (1.6) BS02 RIO 2.3.1.81 GO:0008080 ... P29808 35921328
    23 7mql:C (1.6) BS02 RIO 2.3.1.81 GO:0008080 ... P29808 35921328
    24 7mql:D (1.6) BS02 RIO 2.3.1.81 GO:0008080 ... P29808 35921328
    25 8vts:B (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    26 8vts:D (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    27 8vtt:D (2.45) BS01 RIO ? GO:0003677 ... Q60954 39183959
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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