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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dki:A (2.9) BS01 RB6 3.4.16.4 GO:0004180 ... A0A0H2WXF8 22815485
    2 4dki:B (2.9) BS01 RB6 3.4.16.4 GO:0004180 ... A0A0H2WXF8 22815485
    3 5tx9:A (1.68) BS02 RB6 ? GO:0004180 ... A0A0H2WY27 30366985
    4 5tx9:B (1.68) BS01 RB6 ? GO:0004180 ... A0A0H2WY27 30366985
    5 5txi:A (1.6) BS01 RB6 ? GO:0004180 ... Q2G2X6 30366985
    6 5txi:B (1.6) BS01 RB6 ? GO:0004180 ... Q2G2X6 30366985
    7 6g88:A (3.3) BS01 RB6 ? GO:0005886 ... Q47759 N/A
    8 6g88:B (3.3) BS01 RB6 ? GO:0005886 ... Q47759 N/A
    9 6g88:C (3.3) BS01 RB6 ? GO:0005886 ... Q47759 N/A
    10 6vje:A (1.76) BS01 RB6 3.4.16.4 GO:0000917 ... G3XD46 32152075
    11 7rcy:A (3.0) BS01 RB6 2.4.1.129 GO:0008658 ... Q18B08 35902581
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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