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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4r5x:A (1.85) BS02 R5X 3.4.11.- GO:0006508 ... O96935 25299353 MOAD: Ki=5.5uM
    PDBbind: -logKd/Ki=5.26, Ki=5.5uM
    BindingDB: Ki=5.5nM
    2 4r76:A (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=0.014000nM
    3 4r76:B (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    4 4r76:C (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    5 4r76:D (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    6 4r76:E (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    7 4r76:F (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=0.014000nM
    8 4r76:G (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    9 4r76:H (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    10 4r76:I (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    11 4r76:J (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    12 4r76:K (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    13 4r76:L (2.5) BS04 R5X 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    BindingDB: Ki=0.014000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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