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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a99:A (2.2) BS01 PUT ? GO:0015846 ... P31133 9651355 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    2 1a99:B (2.2) BS01 PUT ? GO:0015846 ... P31133 9651355 MOAD: Kd=2uM
    3 1a99:C (2.2) BS01 PUT ? GO:0015846 ... P31133 9651355 MOAD: Kd=2uM
    4 1a99:D (2.2) BS01 PUT ? GO:0015846 ... P31133 9651355 MOAD: Kd=2uM
    5 1f3t:A (2.0) BS02 PUT 4.1.1.17 GO:0003824 ... P07805 10985770
    6 1f3t:B (2.0) BS02 PUT 4.1.1.17 GO:0003824 ... P07805 10985770
    7 1f3t:C (2.0) BS02 PUT 4.1.1.17 GO:0003824 ... P07805 10985770
    8 1i72:A (2.0) BS02 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    9 1i79:A (2.01) BS02 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    10 1i7b:A (1.9) BS02 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    11 1i7c:A (2.4) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    12 1i7m:A (2.24) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    13 1i7m:C (2.24) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    14 1jl0:A (1.5) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583148
    15 1jl0:B (1.5) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583148
    16 2o06:A (2.0) BS03 PUT 2.5.1.16 GO:0003824 ... P19623 17585781
    17 2o06:B (2.0) BS02 PUT 2.5.1.16 GO:0003824 ... P19623 17585781
    18 3epa:A (2.1) BS02 PUT 4.1.1.50 GO:0004014 ... P17707 19053272 MOAD: Ka=2000M^-1
    19 3epb:A (1.75) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 19053272
    20 3ttm:A (2.0) BS01 PUT ? GO:0015846 ... Q9I6J1 22300763 MOAD: Kd=3nM
    PDBbind: -logKd/Ki=8.52, Kd=3.0nM
    21 3ttm:B (2.0) BS01 PUT ? GO:0015846 ... Q9I6J1 22300763 MOAD: Kd=3nM
    22 4bp1:A (2.17) BS02 PUT 2.5.1.16 GO:0003824 ... Q8II73 25760598
    23 4bp1:B (2.17) BS02 PUT 2.5.1.16 GO:0003824 ... Q8II73 25760598
    24 4bp1:C (2.17) BS02 PUT 2.5.1.16 GO:0003824 ... Q8II73 25760598
    25 4tvb:B (1.689) BS02 PUT 2.5.1.44 GO:0016740 ... O32323 26776105
    26 4uox:A (2.085) BS02 PUT 2.6.1.29
    2.6.1.82    		 GO:0005829 ... P42588 25423189
    27 4uox:B (2.085) BS03 PUT 2.6.1.29
    2.6.1.82    		 GO:0005829 ... P42588 25423189
    28 4uox:D (2.085) BS01 PUT 2.6.1.29
    2.6.1.82    		 GO:0005829 ... P42588 25423189
    29 4xrg:A (1.3) BS03 PUT 2.5.1.44 GO:0016740 ... O32323 26776105
    30 4xrg:B (1.3) BS03 PUT 2.5.1.44 GO:0016740 ... O32323 26776105
    31 5h8l:B (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    32 5h8l:C (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    33 5h8l:D (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    34 5h8l:E (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    35 5h8l:F (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    36 5h8l:G (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    37 5h8l:J (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    38 5h8l:K (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    39 5h8l:L (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    40 5h8l:M (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    41 5h8l:N (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    42 5h8l:O (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    43 6f9g:A (2.388) BS01 PUT ? N/A Q88NI1 29758259 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    44 6f9g:B (2.388) BS01 PUT ? N/A Q88NI1 29758259 MOAD: Kd=2uM
    45 6f9g:C (2.388) BS01 PUT ? N/A Q88NI1 29758259 MOAD: Kd=2uM
    46 6f9g:D (2.388) BS01 PUT ? N/A Q88NI1 29758259 MOAD: Kd=2uM
    47 6f9g:E (2.388) BS01 PUT ? N/A Q88NI1 29758259 MOAD: Kd=2uM
    48 6qmm:A (2.18) BS01 PUT 2.5.1.16 GO:0003824 ... Q31QK9 30877192
    49 6s72:A (1.87) BS02 PUT 2.5.1.44 GO:0016740 ... O32323 34605434
    50 6xxm:A (1.67) BS01 PUT 2.5.1.46 GO:0005515 ... P49366 32235505
    51 6xxm:A (1.67) BS02 PUT 2.5.1.46 GO:0005515 ... P49366 32235505
    52 6xxm:B (1.67) BS01 PUT 2.5.1.46 GO:0005515 ... P49366 32235505
    53 6y87:A (2.15) BS02 PUT 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    54 6y87:C (2.15) BS02 PUT 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    55 6y87:E (2.15) BS02 PUT 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    56 6ye0:A (1.63) BS01 PUT ? GO:0015846 ... P31133 33406388
    57 6ye0:B (1.63) BS01 PUT ? GO:0015846 ... P31133 33406388
    58 8d4i:A (1.32) BS01 PUT 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    59 8d4i:C (1.32) BS01 PUT 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    60 8d5r:A (1.44) BS02 PUT 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    61 8d5r:B (1.44) BS01 PUT 4.1.1.116 GO:0003824 ... Q8ZNC4 36265649
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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