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BioLiP
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3gpe:A (2.0) BS05 PT5 2.7.11.13 N/A P05696 19346474 PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    2 5egi:A (3.3) BS01 PT5 ? GO:0005267 ... Q9NA75 27698420
    3 5egi:A (3.3) BS02 PT5 ? GO:0005267 ... Q9NA75 27698420
    4 5egi:B (3.3) BS01 PT5 ? GO:0005267 ... Q9NA75 27698420
    5 5egi:B (3.3) BS02 PT5 ? GO:0005267 ... Q9NA75 27698420
    6 5egi:C (3.3) BS01 PT5 ? GO:0005267 ... Q9NA75 27698420
    7 5egi:C (3.3) BS02 PT5 ? GO:0005267 ... Q9NA75 27698420
    8 5eik:A (2.3) BS01 PT5 ? GO:0005267 ... Q9NA73 27698420
    9 6v01:A (3.9) BS01 PT5 ? GO:0005216 ... P51787 31883792
    10 6v01:D (3.9) BS01 PT5 ? GO:0005216 ... P51787 31883792
    11 6v01:G (3.9) BS01 PT5 ? GO:0005216 ... P51787 31883792
    12 6v01:J (3.9) BS01 PT5 ? GO:0005216 ... P51787 31883792
    13 7byl:A (2.5) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    14 7byl:C (2.5) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    15 7byl:E (2.5) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    16 7byl:G (2.5) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    17 7bym:A (3.1) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    18 7bym:C (3.1) BS02 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    19 7bym:E (3.1) BS02 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    20 7bym:G (3.1) BS02 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    21 7byn:A (3.3) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    22 7byn:C (3.3) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    23 7byn:E (3.3) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    24 7byn:G (3.3) BS01 PT5 ? GO:0003674 ... P42212
    P56696    		 33238160
    25 7mix:A (3.0) BS09 PT5 ? GO:0001540 ... Q00975 34234349
    26 7miy:A (3.1) BS09 PT5 ? GO:0001540 ... Q00975 34234349
    27 7vfs:A (2.8) BS04 PT5 ? GO:0001540 ... Q00975 34731621
    28 7vfu:A (3.0) BS05 PT5 ? GO:0001540 ... Q00975 34731621
    29 7vfv:A (3.0) BS04 PT5 ? GO:0001540 ... Q00975 34731621
    30 7vfw:A (3.3) BS04 PT5 ? GO:0001540 ... Q00975 34731621
    31 7vnp:A (2.79) BS01 PT5 ? GO:0005216 ... P56696 34767770
    32 7vnp:A (2.79) BS02 PT5 ? GO:0005216 ... P56696 34767770
    33 7vnp:A (2.79) BS05 PT5 ? GO:0005216 ... P56696 34767770
    34 7vnp:C (2.79) BS01 PT5 ? GO:0005216 ... P56696 34767770
    35 7vnp:C (2.79) BS03 PT5 ? GO:0005216 ... P56696 34767770
    36 7vnp:C (2.79) BS04 PT5 ? GO:0005216 ... P56696 34767770
    37 7vnp:E (2.79) BS01 PT5 ? GO:0005216 ... P56696 34767770
    38 7vnp:E (2.79) BS03 PT5 ? GO:0005216 ... P56696 34767770
    39 7vnp:E (2.79) BS04 PT5 ? GO:0005216 ... P56696 34767770
    40 7vnp:G (2.79) BS02 PT5 ? GO:0005216 ... P56696 34767770
    41 7vnp:G (2.79) BS04 PT5 ? GO:0005216 ... P56696 34767770
    42 7vnp:G (2.79) BS05 PT5 ? GO:0005216 ... P56696 34767770
    43 7x1i:A (2.94) BS01 PT5 ? GO:0005272 ... Q8NBS3 37788993
    44 7x1i:B (2.94) BS01 PT5 ? GO:0005272 ... Q8NBS3 37788993
    45 7x1j:A (2.84) BS01 PT5 ? GO:0005272 ... Q8NBS3 37788993
    46 7x1j:B (2.84) BS01 PT5 ? GO:0005272 ... Q8NBS3 37788993
    47 8epl:A (3.1) BS06 PT5 ? GO:0005216 ... Q15878 36446785
    48 8jni:A (3.2) BS01 PT5 ? GO:0005452 ... P04920 38272905
    49 8jni:A (3.2) BS02 PT5 ? GO:0005452 ... P04920 38272905
    50 8jni:B (3.2) BS01 PT5 ? GO:0005452 ... P04920 38272905
    51 8jni:B (3.2) BS02 PT5 ? GO:0005452 ... P04920 38272905
    52 8ti1:A (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    53 8ti1:A (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    54 8ti1:B (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    55 8ti1:B (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    56 8ti1:C (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    57 8ti1:C (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    58 8ti1:D (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    59 8ti1:D (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    60 8ti1:E (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    61 8ti1:F (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    62 8ti1:G (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    63 8ti1:H (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    64 8ti2:A (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    65 8ti2:A (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    66 8ti2:B (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    67 8ti2:B (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    68 8ti2:C (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    69 8ti2:C (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    70 8ti2:D (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    71 8ti2:D (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    72 8ti2:E (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    73 8ti2:F (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    74 8ti2:G (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    75 8ti2:H (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    76 8tkf:A (3.2) BS05 PT5 ? GO:0000822 ... Q14573 37898605
    77 8tkf:A (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    78 8tkf:B (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    79 8tkf:B (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    80 8tkf:C (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    81 8tkf:C (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    82 8tkf:D (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    83 8tkf:D (3.2) BS02 PT5 ? GO:0000822 ... Q14573 37898605
    84 8vt9:A (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    85 8vt9:A (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    86 8vt9:B (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    87 8vt9:B (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    88 8vt9:C (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    89 8vt9:C (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    90 8vt9:D (2.9) BS01 PT5 N/A N/A G0GA88 N/A
    91 8vt9:D (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    92 8vta:A (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    93 8vta:B (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    94 8vta:C (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    95 8vta:D (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    96 8we6:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    97 8we8:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    98 8we9:A (3.0) BS05 PT5 ? GO:0002520 ... Q13936 37972591
    99 8x90:A (2.95) BS03 PT5 ? GO:0001540 ... O00555 38443561
    100 8x91:A (3.11) BS03 PT5 ? GO:0001540 ... O00555 38443561
    101 8x93:A (2.92) BS02 PT5 ? GO:0001540 ... O00555 38443561
    102 8zle:A (3.35) BS03 PT5 N/A N/A N/A 39033175
    103 8zle:A (3.35) BS04 PT5 N/A N/A N/A 39033175
    104 8zle:B (3.35) BS01 PT5 N/A N/A N/A 39033175
    105 9eqg:A (2.4) BS02 PT5 N/A N/A P14867 39261733
    106 9eqg:D (2.4) BS04 PT5 N/A N/A P14867 39261733
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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