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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dsy:A (2.6) BS03 PSF 2.7.11.13 N/A P05696 10562545
    2 3bib:X (2.5) BS01 PSF ? N/A Q6U7R4 18083575 MOAD: ic50=4mM
    3 3kaa:B (3.002) BS02 PSF ? N/A Q8VIM0 20083673
    4 6b8o:A (2.2) BS01 PSF ? N/A Q9NZC2 29794134
    5 6b8o:B (2.2) BS01 PSF ? N/A Q9NZC2 29794134
    6 6b8o:C (2.2) BS01 PSF ? N/A Q9NZC2 29794134
    7 6b8o:D (2.2) BS01 PSF ? N/A Q9NZC2 29794134
    8 6b8o:E (2.2) BS01 PSF ? N/A Q9NZC2 29794134
    9 6b8o:F (2.2) BS01 PSF ? N/A Q9NZC2 29794134
    10 6roh:A (2.8) BS01 PSF 7.6.2.1 GO:0000166 ... P39524 31243363
    11 6snd:H (3.1) BS02 PSF N/A N/A N/A 31653484
    12 7aqq:z (3.06) BS01 PSF 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    13 7ar7:z (3.72) BS01 PSF 4.2.1.- N/A Q9FWR5 33768254
    14 7ar8:z (3.53) BS01 PSF 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    15 7arb:z (3.41) BS02 PSF 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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