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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 375 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6zxs:B (3.0) BS47 PQN 1.97.1.12 GO:0000287 ... A0A0F6NGI2 N/A
    202 6zzx:A (2.7) BS42 PQN 1.97.1.12 GO:0000287 ... W8SY74 34462576
    203 6zzx:B (2.7) BS48 PQN 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    204 6zzy:A (3.16) BS44 PQN 1.97.1.12 GO:0000287 ... W8SY74 34462576
    205 6zzy:B (3.16) BS48 PQN 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    206 7a4p:A (4.2) BS43 PQN 1.97.1.12 GO:0000287 ... W8SY74 34462576
    207 7a4p:B (4.2) BS44 PQN 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    208 7bgi:A (2.54) BS42 PQN 1.97.1.12 GO:0000287 ... P12154 N/A
    209 7bgi:B (2.54) BS49 PQN 1.97.1.12 GO:0000287 ... P09144 N/A
    210 7blx:A (3.15) BS41 PQN 1.97.1.12 GO:0000287 ... P12154 N/A
    211 7blx:B (3.15) BS47 PQN 1.97.1.12 GO:0000287 ... P09144 N/A
    212 7blz:A (3.1) BS41 PQN 1.97.1.12 GO:0000287 ... Q85FY7 N/A
    213 7blz:B (3.1) BS47 PQN 1.97.1.12 GO:0000287 ... Q85FY6 N/A
    214 7coy:aA (2.5) BS38 PQN 1.97.1.12 GO:0000287 ... B0C474 33879791
    215 7coy:aB (2.5) BS33 PQN 1.97.1.12 GO:0000287 ... B0C475 33879791
    216 7coy:bA (2.5) BS37 PQN 1.97.1.12 GO:0000287 ... B0C474 33879791
    217 7coy:bB (2.5) BS33 PQN 1.97.1.12 GO:0000287 ... B0C475 33879791
    218 7coy:cA (2.5) BS37 PQN 1.97.1.12 GO:0000287 ... B0C474 33879791
    219 7coy:cB (2.5) BS33 PQN 1.97.1.12 GO:0000287 ... B0C475 33879791
    220 7d0j:A (3.42) BS39 PQN 1.97.1.12 GO:0000287 ... P12154 33597543
    221 7d0j:B (3.42) BS42 PQN 1.97.1.12 GO:0000287 ... P09144 33597543
    222 7dkz:A (2.393) BS41 PQN 1.97.1.12 GO:0000287 ... P05310 33788400
    223 7dkz:B (2.393) BS46 PQN 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    224 7dr0:A (3.3) BS45 PQN 1.97.1.12 GO:0000287 ... P48112 N/A
    225 7dr0:B (3.3) BS42 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    226 7dr1:A (3.2) BS44 PQN 1.97.1.12 GO:0000287 ... P48112 N/A
    227 7dr1:B (3.2) BS40 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    228 7dr2:aA (3.8) BS44 PQN 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    229 7dr2:aB (3.8) BS41 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    230 7dr2:bA (3.8) BS45 PQN 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    231 7dr2:bB (3.8) BS39 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    232 7dr2:cA (3.8) BS44 PQN 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    233 7dr2:cB (3.8) BS41 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    234 7dr2:dA (3.8) BS45 PQN 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    235 7dr2:dB (3.8) BS39 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    236 7dwq:A (3.3) BS40 PQN 1.97.1.12 GO:0000287 ... B0C474 34002536
    237 7dwq:B (3.3) BS37 PQN 1.97.1.12 GO:0000287 ... B0C475 34002536
    238 7dz7:A (2.84) BS44 PQN 1.97.1.12 GO:0000287 ... P12154 34239095
    239 7dz7:B (2.84) BS48 PQN 1.97.1.12 GO:0000287 ... P09144 34239095
    240 7dz8:A (3.16) BS44 PQN 1.97.1.12 GO:0000287 ... P12154 34239095
    241 7dz8:B (3.16) BS49 PQN 1.97.1.12 GO:0000287 ... P09144 34239095
    242 7ew6:A (3.4) BS40 PQN 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    243 7ew6:B (3.4) BS45 PQN 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    244 7ewk:A (3.88) BS41 PQN 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    245 7ewk:B (3.88) BS44 PQN 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    246 7f9o:A (4.5) BS40 PQN 1.97.1.12 GO:0000287 ... S4Z1K7 34879391
    247 7f9o:B (4.5) BS45 PQN 1.97.1.12 GO:0000287 ... S4Z289 34879391
    248 7f9o:e (4.5) BS41 PQN 1.97.1.12 GO:0000287 ... S4Z1K7 34879391
    249 7f9o:f (4.5) BS44 PQN 1.97.1.12 GO:0000287 ... S4Z289 34879391
    250 7fix:A1 (1.97) BS45 PQN 1.97.1.12 GO:0000287 ... P0A405 36097054
    251 7fix:A2 (1.97) BS45 PQN 1.97.1.12 GO:0000287 ... P0A405 36097054
    252 7fix:A3 (1.97) BS45 PQN 1.97.1.12 GO:0000287 ... P0A405 36097054
    253 7fix:B1 (1.97) BS48 PQN 1.97.1.12 GO:0000287 ... P0A407 36097054
    254 7fix:B2 (1.97) BS48 PQN 1.97.1.12 GO:0000287 ... P0A407 36097054
    255 7fix:B3 (1.97) BS48 PQN 1.97.1.12 GO:0000287 ... P0A407 36097054
    256 7ksq:A (2.8) BS40 PQN 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    257 7ksq:B (2.8) BS47 PQN 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    258 7kux:A (2.8) BS41 PQN 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    259 7kux:B (2.8) BS47 PQN 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    260 7lx0:A (2.96) BS44 PQN 1.97.1.12 GO:0000287 ... G6FME9 N/A
    261 7lx0:B (2.96) BS48 PQN 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    262 7lx0:G (2.96) BS44 PQN 1.97.1.12 GO:0000287 ... G6FME9 N/A
    263 7lx0:H (2.96) BS48 PQN 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    264 7lx0:a (2.96) BS44 PQN 1.97.1.12 GO:0000287 ... G6FME9 N/A
    265 7lx0:b (2.96) BS48 PQN 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    266 7m75:A (2.75) BS44 PQN 1.97.1.12 GO:0000287 ... P0A405 34750381
    267 7m75:B (2.75) BS46 PQN 1.97.1.12 GO:0000287 ... P0A407 34750381
    268 7m76:A (3.0) BS45 PQN 1.97.1.12 GO:0000287 ... P0A405 34750381
    269 7m76:B (3.0) BS50 PQN 1.97.1.12 GO:0000287 ... P0A407 34750381
    270 7m78:A (3.0) BS42 PQN 1.97.1.12 GO:0000287 ... P0A405 34750381
    271 7m78:B (3.0) BS47 PQN 1.97.1.12 GO:0000287 ... P0A407 34750381
    272 7o1v:A (4.31) BS41 PQN 1.97.1.12 GO:0000287 ... P29254 34472838
    273 7o1v:B (4.31) BS47 PQN 1.97.1.12 GO:0000287 ... P29255 34472838
    274 7qco:A (3.7) BS43 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGM5 35059628
    275 7qco:B (3.7) BS44 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGS2 35059628
    276 7qco:E (3.7) BS45 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGM5 35059628
    277 7qco:G (3.7) BS42 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGS2 35059628
    278 7qco:a (3.7) BS43 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGM5 35059628
    279 7qco:b (3.7) BS41 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGS2 35059628
    280 7qco:e (3.7) BS42 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGM5 35059628
    281 7qco:g (3.7) BS46 PQN 1.97.1.12 GO:0000287 ... A0A2S6VGS2 35059628
    282 7r3k:A (2.52) BS44 PQN 1.97.1.12 GO:0000287 ... P12154 36979472
    283 7r3k:B (2.52) BS47 PQN 1.97.1.12 GO:0000287 ... P09144 36979472
    284 7s3d:A (2.91) BS44 PQN 1.97.1.12 GO:0000287 ... B4WP20 34793839
    285 7s3d:B (2.91) BS50 PQN 1.97.1.12 GO:0000287 ... B4WP21 34793839
    286 7s3d:G (2.91) BS45 PQN 1.97.1.12 GO:0000287 ... B4WP20 34793839
    287 7s3d:H (2.91) BS50 PQN 1.97.1.12 GO:0000287 ... B4WP21 34793839
    288 7s3d:a (2.91) BS45 PQN 1.97.1.12 GO:0000287 ... B4WP20 34793839
    289 7s3d:b (2.91) BS50 PQN 1.97.1.12 GO:0000287 ... B4WP21 34793839
    290 7umh:A (2.6) BS46 PQN 1.97.1.12 GO:0000287 ... P29254 37532717
    291 7umh:B (2.6) BS49 PQN 1.97.1.12 GO:0000287 ... P29255 37532717
    292 7umh:G (2.6) BS41 PQN 1.97.1.12 GO:0000287 ... P29255 37532717
    293 7umh:H (2.6) BS51 PQN 1.97.1.12 GO:0000287 ... P29254 37532717
    294 7umh:a (2.6) BS46 PQN 1.97.1.12 GO:0000287 ... P29254 37532717
    295 7umh:b (2.6) BS49 PQN 1.97.1.12 GO:0000287 ... P29255 37532717
    296 7wfd:AA (3.25) BS43 PQN 1.97.1.12 GO:0000287 ... P56766 35123031
    297 7wfd:AB (3.25) BS50 PQN 1.97.1.12 GO:0000287 ... P56767 35123031
    298 7wfe:BA (3.25) BS42 PQN 1.97.1.12 GO:0000287 ... P56766 35123031
    299 7wfe:BB (3.25) BS47 PQN 1.97.1.12 GO:0000287 ... P56767 35123031
    300 7wg5:AA (3.89) BS43 PQN 1.97.1.12 GO:0000287 ... P56766 35123031
    301 7wg5:AB (3.89) BS50 PQN 1.97.1.12 GO:0000287 ... P56767 35123031
    302 7wg5:BA (3.89) BS42 PQN 1.97.1.12 GO:0000287 ... P56766 35123031
    303 7wg5:BB (3.89) BS47 PQN 1.97.1.12 GO:0000287 ... P56767 35123031
    304 7wyi:A (3.9) BS19 PQN 1.97.1.12 GO:0000287 ... P12154 37270022
    305 7wyi:B (3.9) BS19 PQN 1.97.1.12 GO:0000287 ... P09144 37270022
    306 7wzn:A (4.9) BS23 PQN 1.97.1.12 GO:0000287 ... P12154 37270022
    307 7wzn:B (4.9) BS29 PQN 1.97.1.12 GO:0000287 ... P09144 37270022
    308 7xqp:A (2.68) BS42 PQN 1.97.1.12 GO:0000287 ... Q8MFA3 37095225
    309 7xqp:B (2.68) BS46 PQN 1.97.1.12 GO:0000287 ... Q8MFA2 37095225
    310 7y3f:A (2.62) BS44 PQN 1.97.1.12 GO:0000287 ... P58576 36805598
    311 7y3f:B (2.62) BS51 PQN 1.97.1.12 GO:0000287 ... P58565 36805598
    312 7y5e:A2 (3.3) BS40 PQN 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    313 7y5e:AN (3.3) BS40 PQN 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    314 7y5e:B2 (3.3) BS42 PQN 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    315 7y5e:BN (3.3) BS41 PQN 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    316 7y7a:A7 (4.3) BS37 PQN 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    317 7y7a:Ao (4.3) BS37 PQN 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    318 7y7a:B7 (4.3) BS41 PQN 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    319 7y7a:Bo (4.3) BS41 PQN 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    320 7y7b:A (2.66) BS47 PQN 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    321 7y7b:B (2.66) BS49 PQN 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    322 7y8a:A (2.71) BS50 PQN 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    323 7y8a:B (2.71) BS49 PQN 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    324 7yca:A (2.94) BS42 PQN 1.97.1.12 GO:0000287 ... Q0P3K1 36951548
    325 7yca:B (2.94) BS50 PQN 1.97.1.12 GO:0000287 ... Q0P3K2 36951548
    326 7zq9:A (2.74) BS43 PQN 1.97.1.12 GO:0000287 ... P12154 36229605
    327 7zq9:B (2.74) BS46 PQN 1.97.1.12 GO:0000287 ... P09144 36229605
    328 7zqc:A (2.31) BS43 PQN 1.97.1.12 GO:0000287 ... P12154 36229605
    329 7zqc:B (2.31) BS46 PQN 1.97.1.12 GO:0000287 ... P09144 36229605
    330 7zqd:A (2.97) BS43 PQN 1.97.1.12 GO:0000287 ... P12154 36229605
    331 7zqd:A2 (2.97) BS43 PQN 1.97.1.12 GO:0000287 ... P12154 36229605
    332 7zqd:B (2.97) BS46 PQN 1.97.1.12 GO:0000287 ... P09144 36229605
    333 7zqd:B2 (2.97) BS46 PQN 1.97.1.12 GO:0000287 ... P09144 36229605
    334 8am5:a (3.1) BS43 PQN 1.97.1.12 GO:0000287 ... P29254 37542031
    335 8am5:b (3.1) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 37542031
    336 8asl:a (3.15) BS43 PQN 1.97.1.12 GO:0000287 ... P29254 37542031
    337 8asl:b (3.15) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 37542031
    338 8asp:a (2.9) BS43 PQN 1.97.1.12 GO:0000287 ... P29254 37542031
    339 8asp:b (2.9) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 37542031
    340 8bcv:A (2.2) BS36 PQN 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    341 8bcv:B (2.2) BS39 PQN 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    342 8bcw:A (2.11) BS43 PQN 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    343 8bcw:B (2.11) BS45 PQN 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    344 8cmo:A (2.81) BS42 PQN N/A GO:0009579 ... N/A N/A
    345 8cmo:B (2.81) BS48 PQN N/A GO:0009522 ... N/A N/A
    346 8h2u:A (3.4) BS40 PQN 1.97.1.12 GO:0000287 ... P12154 37270022
    347 8h2u:B (3.4) BS44 PQN 1.97.1.12 GO:0000287 ... P09144 37270022
    348 8htu:A (2.87) BS44 PQN 1.97.1.12 GO:0000287 ... Q8MFA3 37474782
    349 8htu:B (2.87) BS45 PQN 1.97.1.12 GO:0000287 ... Q8MFA2 37474782
    350 8j6z:A (2.79) BS41 PQN 1.97.1.12 GO:0000287 ... P56766 37936349
    351 8j6z:B (2.79) BS19 PQN 1.97.1.12 GO:0000287 ... P56767 37936349
    352 8j7a:A (3.06) BS32 PQN 1.97.1.12 GO:0000287 ... P56766 37936349
    353 8j7a:B (3.06) BS40 PQN 1.97.1.12 GO:0000287 ... P56767 37936349
    354 8j7b:A (3.22) BS29 PQN 1.97.1.12 GO:0000287 ... P56766 37936349
    355 8j7b:B (3.22) BS24 PQN 1.97.1.12 GO:0000287 ... P56767 37936349
    356 8jjr:a (2.8) BS34 PQN N/A GO:0009579 ... N/A 38493166
    357 8jjr:b (2.8) BS37 PQN N/A GO:0009579 ... N/A 38493166
    358 8jw0:a (2.9) BS32 PQN 1.97.1.12 GO:0000287 ... P58309 38319970
    359 8jw0:b (2.9) BS31 PQN 1.97.1.12 GO:0009507 ... P58383 38319970
    360 8jze:a (2.99) BS34 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    361 8jze:b (2.99) BS38 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    362 8jzf:a (2.7) BS34 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    363 8jzf:b (2.7) BS38 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    364 8wey:A (1.92) BS40 PQN N/A GO:0009579 ... N/A 38442179
    365 8wey:B (1.92) BS48 PQN N/A GO:0009522 ... N/A 38442179
    366 8wgh:A (2.4) BS42 PQN N/A GO:0000287 ... A0A8A0WPY6 39060282
    367 8wgh:B (2.4) BS47 PQN N/A GO:0000287 ... G9IB61 39060282
    368 8wm6:A (2.7) BS42 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    369 8wm6:B (2.7) BS48 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    370 8wmj:A (3.0) BS44 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    371 8wmj:B (3.0) BS48 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    372 8wmv:A (2.94) BS43 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    373 8wmv:B (2.94) BS48 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    374 8wmw:A (3.3) BS43 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    375 8wmw:B (3.3) BS45 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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