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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6u2s:A (1.5) BS01 PQJ ? GO:0005576 ... Q2FXB1 32179646
    2 6u2s:A (1.5) BS02 PQJ ? GO:0005576 ... Q2FXB1 32179646
    3 6u3f:A (1.78) BS01 PQJ ? GO:0005576 ... Q5FBD2 32179646
    4 6u3f:A (1.78) BS02 PQJ ? GO:0005576 ... Q5FBD2 32179646
    5 6u3t:A (2.79) BS01 PQJ ? GO:0001897 ... P09616 32179646
    6 6u3t:A (2.79) BS02 PQJ ? GO:0001897 ... P09616 32179646
    7 6u3t:B (2.79) BS01 PQJ ? GO:0001897 ... P09616 32179646
    8 6u3t:B (2.79) BS02 PQJ ? GO:0001897 ... P09616 32179646
    9 6u3y:A (2.04) BS01 PQJ ? GO:0005576 ... Q5FBD2 32179646
    10 6u3y:A (2.04) BS02 PQJ ? GO:0005576 ... Q5FBD2 32179646
    11 6u3y:A (2.04) BS03 PQJ ? GO:0005576 ... Q5FBD2 32179646
    12 6u49:A (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    13 6u49:A (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    14 6u49:A (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    15 6u49:B (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    16 6u49:B (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    17 6u49:B (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    18 6u49:C (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    19 6u49:C (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    20 6u49:C (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    21 6u49:C (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    22 6u49:D (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    23 6u49:D (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    24 6u49:D (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    25 6u49:D (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    26 6u49:E (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    27 6u49:E (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    28 6u49:E (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    29 6u49:E (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    30 6u49:F (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    31 6u49:F (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    32 6u49:F (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    33 6u49:F (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    34 6u49:G (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    35 6u49:G (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    36 6u49:G (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    37 6u4p:A (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    38 6u4p:A (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    39 6u4p:B (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    40 6u4p:B (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    41 6u4p:C (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    42 6u4p:C (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    43 6u4p:D (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    44 6u4p:D (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    45 6u4p:E (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    46 6u4p:E (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    47 6u4p:F (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    48 6u4p:F (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    49 6u4p:G (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    50 6u4p:G (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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