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BioLiP
Download all results in tab-seperated text for 85 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2o1c:A (1.8) BS01 PPV 3.6.1.67 GO:0000287 ... P0AFC0 17698004 MOAD: Ki=19uM
    2 2o1c:B (1.8) BS01 PPV 3.6.1.67 GO:0000287 ... P0AFC0 17698004 MOAD: Ki=19uM
    3 2o1c:C (1.8) BS01 PPV 3.6.1.67 GO:0000287 ... P0AFC0 17698004 MOAD: Ki=19uM
    4 2o5w:A (2.6) BS01 PPV 3.6.1.67 GO:0000287 ... P0AFC0 17698004
    5 2o5w:C (2.6) BS01 PPV 3.6.1.67 GO:0000287 ... P0AFC0 17698004
    6 2pfq:A (2.1) BS08 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 17475573
    7 2pmd:A (2.65) BS03 PPV 3.6.5.3 GO:0000049 ... Q980A5 17825838
    8 2pmd:A (2.65) BS04 PPV 3.6.5.3 GO:0000049 ... Q980A5 17825838
    9 2pmd:B (2.65) BS02 PPV 3.6.5.3 GO:0000049 ... Q980A5 17825838
    10 2pmd:B (2.65) BS03 PPV 3.6.5.3 GO:0000049 ... Q980A5 17825838
    11 3aq0:B (2.65) BS01 PPV 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    12 3aq0:C (2.65) BS04 PPV 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    13 3aq0:E (2.65) BS04 PPV 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    14 3aq0:F (2.65) BS01 PPV 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    15 3aq0:G (2.65) BS01 PPV 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    16 3atr:A (1.8) BS02 PPV 1.3.-.- GO:0006650 ... Q4JA33 21515284
    17 3eph:A (2.95) BS03 PPV 2.5.1.75 GO:0000049 ... P07884 18852462
    18 3eph:B (2.95) BS03 PPV 2.5.1.75 GO:0000049 ... P07884 18852462
    19 3epk:B (3.2) BS04 PPV 2.5.1.75 GO:0000049 ... P07884 18852462
    20 3krf:A (2.2) BS01 PPV 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    21 3kro:A (1.95) BS02 PPV 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    22 3krp:A (2.42) BS01 PPV 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    23 4jg4:A (2.296) BS01 PPV 3.1.26.5 GO:0000049 ... P25814 24364358
    24 4jg4:A (2.296) BS02 PPV 3.1.26.5 GO:0000049 ... P25814 24364358
    25 4kle:A (1.97) BS07 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    26 4klf:A (1.85) BS07 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    27 4klg:A (1.701) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    28 4klh:A (1.876) BS06 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    29 4kli:A (1.597) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    30 4klj:A (1.799) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    31 4kll:A (1.841) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    32 4klm:A (1.747) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    33 4klo:A (1.845) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    34 4klq:A (1.999) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    35 4kls:A (1.978) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    36 4klt:A (1.979) BS06 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    37 4okm:A (2.1) BS03 PPV 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    38 4okm:B (2.1) BS03 PPV 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    39 4okm:C (2.1) BS03 PPV 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    40 4rpy:A (1.9) BS06 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    41 4rpz:A (2.19) BS06 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    42 4rq0:A (2.2) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    43 4rq2:A (2.2) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    44 4rq4:A (2.1) BS07 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    45 4rq5:A (2.32) BS06 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    46 4rq6:A (2.25) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    47 4rq8:A (2.0) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    48 4wpa:A (1.7) BS02 PPV 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    49 4wpa:B (1.7) BS02 PPV 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    50 5fll:A (2.34) BS02 PPV 6.2.1.14 GO:0000287 ... P53559 28414710
    51 5fll:B (2.34) BS02 PPV 6.2.1.14 GO:0000287 ... P53559 28414710
    52 5fm0:A (2.44) BS02 PPV 6.2.1.14 GO:0000287 ... P53559 28414710
    53 5fm0:B (2.44) BS02 PPV 6.2.1.14 GO:0000287 ... P53559 28414710
    54 5tba:A (2.49) BS04 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    55 5tbb:A (2.39) BS05 PPV 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    56 6fd5:A (1.55) BS03 PPV 2.4.2.7 GO:0002055 ... P07741 29576532
    57 6fd5:B (1.55) BS01 PPV 2.4.2.7 GO:0002055 ... P07741 29576532
    58 6fd6:A (1.8) BS02 PPV 2.4.2.7 GO:0002055 ... P07741 29576532
    59 6fd6:B (1.8) BS02 PPV 2.4.2.7 GO:0002055 ... P07741 29576532
    60 6kd7:A (2.0) BS01 PPV ? GO:0004659 ... L7W5I6 31427080
    61 6oh6:A (2.07) BS01 PPV 4.2.3.- GO:0016829 ... A0A158RFK9 30981884
    62 7m44:A (1.901) BS07 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    63 7m45:A (1.889) BS04 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    64 7m46:A (1.92) BS05 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    65 7m47:A (1.648) BS05 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    66 7m49:A (1.6) BS08 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    67 7m4a:A (1.868) BS04 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    68 7m4b:A (1.66) BS07 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    69 7m4c:A (1.95) BS04 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    70 7m4e:A (1.903) BS04 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    71 7m4f:A (1.947) BS05 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    72 7m4h:A (1.923) BS07 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    73 7m4i:A (2.005) BS07 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    74 7m4l:A (1.701) BS07 PPV 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    75 7x8k:B (3.0) BS01 PPV 2.7.7.13 GO:0004475 ... O22287 35677252
    76 7x8k:D (3.0) BS01 PPV 2.7.7.13 GO:0004475 ... O22287 35677252
    77 7zrn:A (1.82) BS01 PPV 4.2.3.175 GO:0016829 ... A9GK58 36249875
    78 7zrn:B (1.82) BS01 PPV 4.2.3.175 GO:0016829 ... A9GK58 36249875
    79 8gr7:A (1.9) BS02 PPV N/A N/A N/A 37566786
    80 8gr7:B (1.9) BS02 PPV N/A N/A N/A 37566786
    81 8yl9:A (2.75) BS04 PPV 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    82 8yl9:B (2.75) BS04 PPV 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    83 8yl9:I (2.75) BS04 PPV 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    84 8yla:A (1.3) BS03 PPV 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    85 8yla:B (1.3) BS03 PPV 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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