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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1p7l:C (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    2 1p7l:C (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    3 1p7l:D (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    4 1p7l:D (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    5 1rg9:A (2.5) BS02 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    6 1rg9:A (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    7 1rg9:B (2.5) BS02 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    8 1rg9:B (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    9 1rg9:C (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    10 1rg9:C (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    11 1rg9:D (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    12 1rg9:D (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    13 4ndn:A (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    14 4ndn:B (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    15 4ndn:C (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    16 4ndn:D (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    17 5a19:A (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 26858410
    18 5a1g:A (1.83) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 26858410
    19 5a1i:A (1.09) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 26858410
    20 6fbn:A (2.7) BS02 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    21 6fbn:B (2.7) BS02 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    22 6fbo:A (1.8) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    23 6fbp:A (1.65) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    24 6fbp:B (1.65) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    25 6fcb:A (2.7) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    26 6g6r:A (1.35) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 30776190
    27 6rkc:A (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    28 6rkc:A (2.56) BS04 PPK N/A GO:0004478 ... N/A 31520601
    29 6rkc:B (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    30 6rkc:B (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    31 6rkc:C (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    32 6rkc:C (2.56) BS05 PPK N/A GO:0004478 ... N/A 31520601
    33 6rkc:D (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    34 6rkc:D (2.56) BS05 PPK N/A GO:0004478 ... N/A 31520601
    35 6rkc:E (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    36 6rkc:E (2.56) BS04 PPK N/A GO:0004478 ... N/A 31520601
    37 6rkc:F (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    38 6rkc:F (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    39 6rkc:G (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    40 6rkc:G (2.56) BS05 PPK N/A GO:0004478 ... N/A 31520601
    41 6rkc:H (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    42 6rkc:H (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    43 6vd1:A (1.32) BS01 PPK 2.5.1.6 GO:0004478 ... P17562 32057875
    44 6vd1:A (1.32) BS03 PPK 2.5.1.6 GO:0004478 ... P17562 32057875
    45 6vd1:B (1.32) BS01 PPK 2.5.1.6 GO:0004478 ... P17562 32057875
    46 6vd1:B (1.32) BS03 PPK 2.5.1.6 GO:0004478 ... P17562 32057875
    47 7ll3:A (2.24) BS02 PPK N/A GO:0004478 ... N/A 34977903
    48 7ll3:A (2.24) BS03 PPK N/A GO:0004478 ... N/A 34977903
    49 7ll3:B (2.24) BS01 PPK N/A GO:0004478 ... N/A 34977903
    50 7ll3:B (2.24) BS02 PPK N/A GO:0004478 ... N/A 34977903
    51 7lnn:A (2.5) BS01 PPK N/A GO:0004478 ... N/A 34977903
    52 7lnn:A (2.5) BS02 PPK N/A GO:0004478 ... N/A 34977903
    53 7lnn:B (2.5) BS01 PPK N/A GO:0004478 ... N/A 34977903
    54 7lnn:B (2.5) BS02 PPK N/A GO:0004478 ... N/A 34977903
    55 7r3b:A (2.82) BS02 PPK 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    56 7r3b:B (2.82) BS01 PPK 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    57 7r3b:G (2.82) BS01 PPK 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    58 7r3b:H (2.82) BS03 PPK 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    59 8axz:A (1.154) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 N/A
    60 8swa:A (1.999) BS01 PPK 2.5.1.6 GO:0004478 ... Q00266 37917677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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