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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3t6a:B (2.4) BS01 POG ? GO:0005085 ... O75815 22081014
    2 3t6a:D (2.4) BS01 POG ? GO:0005085 ... O75815 22081014
    3 4v12:A (1.5) BS01 POG ? N/A A0R724 25754266
    4 5ahw:C (2.15) BS02 POG ? GO:0000166 ... A0QYW6 25802331
    5 5ahw:D (2.15) BS02 POG ? GO:0000166 ... A0QYW6 25802331
    6 5ahw:E (2.15) BS01 POG ? GO:0000166 ... A0QYW6 25802331
    7 6ae9:A (1.47) BS02 POG 3.1.3.16 N/A Q942P9 30453087
    8 6ae9:B (1.47) BS02 POG 3.1.3.16 N/A Q942P9 30453087
    9 6ae9:B (1.47) BS03 POG 3.1.3.16 N/A Q942P9 30453087
    10 6bpm:A (2.5) BS01 POG ? GO:0006826 ... P75780 31712312
    11 6bpm:A (2.5) BS02 POG ? GO:0006826 ... P75780 31712312
    12 6bpm:A (2.5) BS03 POG ? GO:0006826 ... P75780 31712312
    13 6bpm:A (2.5) BS04 POG ? GO:0006826 ... P75780 31712312
    14 6bpm:C (2.5) BS01 POG ? GO:0006826 ... P75780 31712312
    15 6bpm:C (2.5) BS02 POG ? GO:0006826 ... P75780 31712312
    16 6bpm:C (2.5) BS03 POG ? GO:0006826 ... P75780 31712312
    17 6bpm:C (2.5) BS04 POG ? GO:0006826 ... P75780 31712312
    18 6bpm:C (2.5) BS05 POG ? GO:0006826 ... P75780 31712312
    19 6bpn:A (2.1) BS01 POG ? GO:0006826 ... P75780 31712312
    20 6ock:A (1.9) BS03 POG ? GO:0003677 ... P49065 31905261
    21 8bsg:A (1.89) BS03 POG ? GO:0003677 ... P49065 36675044
    22 8bsg:A (1.89) BS04 POG ? GO:0003677 ... P49065 36675044
    23 8hjg:A (1.7) BS01 POG N/A N/A N/A 39080270
    24 8hjh:A (1.76) BS01 POG N/A N/A N/A 39080270
    25 8hjh:B (1.76) BS01 POG N/A N/A N/A 39080270
    26 8hjl:A (1.72) BS02 POG N/A N/A N/A 39080270
    27 8hjl:B (1.72) BS02 POG N/A N/A N/A 39080270
    28 8hjp:A (2.2) BS01 POG N/A N/A N/A 39080270
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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