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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e1y:A (2.23) BS02 PO3 2.4.1.1 GO:0000166 ... P00489 10924512
    2 1j6t:A (-1.00) BS01 PO3 2.7.1.197 N/A P00550 12202490
    3 1j6t:B (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 12202490
    4 1nuw:A (1.3) BS02 PO3 3.1.3.11 GO:0005737 ... P00636 12595528
    5 1nux:A (1.6) BS02 PO3 3.1.3.11 GO:0005737 ... P00636 12595528
    6 1o2f:A (-1.00) BS01 PO3 2.7.1.69 GO:0005515 ... P69783 12716891
    7 1o2f:B (-1.00) BS01 PO3 2.7.1.199 GO:0008982 ... P69786 12716891
    8 1o5x:A (1.1) BS01 PO3 5.3.1.1 GO:0004807 ... Q07412 14563846
    9 1sum:B (2.0) BS08 PO3 ? GO:0005737 ... Q9X256 15716271
    10 1sum:B (2.0) BS09 PO3 ? GO:0005737 ... Q9X256 15716271
    11 1v0t:A (1.53) BS01 PO3 3.1.4.4 GO:0003824 ... P84147 15165852
    12 1v0u:A (1.42) BS01 PO3 3.1.4.4 GO:0003824 ... P84147 15165852
    13 1v0v:A (1.7) BS01 PO3 3.1.4.4 GO:0003824 ... P84147 15165852
    14 1v0w:A (1.35) BS01 PO3 3.1.4.4 GO:0003824 ... P84147 15165852
    15 1vrc:A (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    16 1vrc:B (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    17 1vrc:C (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    18 1vrc:D (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    19 1zed:A (1.57) BS05 PO3 3.1.3.1 GO:0000287 ... P05187 15946677
    20 2cgl:A (1.88) BS03 PO3 2.7.1.5 GO:0004370 ... P32171 16674975
    21 2mp0:B (-1.00) BS01 PO3 2.7.1.- GO:0005515 ... P69783 25131700
    22 2ske:A (2.46) BS02 PO3 2.4.1.1 GO:0000166 ... P00489 8976550
    23 2wy2:D (-1.00) BS01 PO3 2.7.1.196 GO:0005515 ... P69795 19959833
    24 3bb0:A (1.5) BS01 PO3 1.11.1.10 GO:0004601 ... P49053 18163651
    25 3gp3:A (1.5) BS01 PO3 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    26 3gp3:B (1.5) BS01 PO3 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    27 3gp3:C (1.5) BS01 PO3 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    28 3gp3:D (1.5) BS01 PO3 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    29 3iss:B (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    30 3iss:C (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    31 3iss:E (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    32 3iss:F (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    33 3iss:G (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    34 3iss:I (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    35 3iss:J (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    36 3iss:K (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    37 3iss:L (2.5) BS01 PO3 2.5.1.7 GO:0003824 ... P0A749 19899805
    38 3w81:B (2.3) BS02 PO3 3.2.1.76 GO:0004553 ... P35475 23959878
    39 3zw7:B (1.898) BS02 PO3 3.1.3.70 GO:0000287 ... Q72K29 21961705
    40 4buc:A (2.17) BS01 PO3 6.3.2.9 GO:0005524 ... Q9WY76 23826965
    41 4buc:B (2.17) BS01 PO3 6.3.2.9 GO:0005524 ... Q9WY76 23826965
    42 4he2:A (1.6) BS02 PO3 3.1.3.11 GO:0005515 ... O00757 24086250
    43 4rcv:A (2.294) BS04 PO3 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    44 4rcv:B (2.294) BS03 PO3 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    45 5lq5:A (1.46) BS01 PO3 ? GO:0042597 ... A3PC74 29170493
    46 6qcb:A (1.55) BS01 PO3 3.4.23.5 GO:0004190 ... P07339 32003991
    47 6u8z:A (1.799) BS01 PO3 3.1.4.4 GO:0003824 ... Q13393 32198492
    48 7moj:A (1.9) BS01 PO3 3.1.3.48 GO:0006470 ... Q9ZVN4 35468885
    49 7moj:B (1.9) BS01 PO3 3.1.3.48 GO:0006470 ... Q9ZVN4 35468885
    50 7mom:A (1.7) BS01 PO3 3.1.3.48 GO:0006470 ... Q9ZVN4 35468885
    51 7mom:B (1.7) BS01 PO3 3.1.3.48 GO:0006470 ... Q9ZVN4 35468885
    52 7zdb:C (3.35) BS04 PO3 7.4.2.- GO:0005524 ... P23886 37095238
    53 8df8:A (2.92) BS03 PO3 ? GO:0003677 ... Q977W1 35969036
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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