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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fqg:A (1.7) BS01 PNM 3.5.2.6 GO:0005515 ... P62593 1436034
    2 1ghp:A (1.76) BS01 PNM 3.5.2.6 GO:0008800 ... P00807 11327855
    3 1iyq:A (2.1) BS01 PNM 3.5.2.6 GO:0008800 ... Q47066 12221102
    4 1mwt:A (2.45) BS01 PNM 2.4.1.129 GO:0008658 ... Q93IC2 12389036 PDBbind: -logKd/Ki=1.88, Kd=13.3mM
    5 1mwt:B (2.45) BS01 PNM 2.4.1.129 GO:0008658 ... Q93IC2 12389036
    6 1pwc:A (1.1) BS01 PNM 3.4.16.4 GO:0004180 ... P15555 15581896
    7 1xa7:A (2.4) BS01 PNM ? GO:0008658 ... P18357 15322076
    8 1xa7:B (2.4) BS01 PNM ? GO:0008658 ... P18357 15322076
    9 2ex8:A (1.6) BS01 PNM 3.4.16.4
    3.4.21.-    		 GO:0000270 ... P24228 16411754
    10 2iwc:A (2.1) BS01 PNM ? GO:0008658 ... P0A0B0 16846613
    11 2j8y:A (1.9) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    12 2j8y:B (1.9) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    13 2j8y:C (1.9) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    14 2j8y:D (1.9) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    15 2jbf:A (1.7) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    16 2jbf:B (1.7) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    17 2jbf:C (1.7) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    18 2jbf:D (1.7) BS01 PNM 3.4.16.4 GO:0008800 ... Q8DH45 19100272
    19 2wgi:A (2.85) BS01 PNM 3.5.2.6 GO:0008658 ... P14489 19860471 PDBbind: -logKd/Ki=4.07, Kd=85uM
    20 2wgi:B (2.85) BS01 PNM 3.5.2.6 GO:0008658 ... P14489 19860471
    21 3ly4:A (1.8) BS01 PNM 3.5.2.6 GO:0005886 ... P00808 N/A
    22 3udi:A (2.6) BS01 PNM 2.4.1.129
    3.4.16.4    		 GO:0008658 ... G1C794 22050378
    23 3udi:B (2.6) BS01 PNM 2.4.1.129
    3.4.16.4    		 GO:0008658 ... G1C794 22050378
    24 3upo:A (2.3) BS01 PNM 3.4.16.4 GO:0005829 ... P9WKD1 22365933
    25 3upo:B (2.3) BS01 PNM 3.4.16.4 GO:0005829 ... P9WKD1 22365933
    26 4n1x:A (2.0) BS01 PNM 2.4.1.129 GO:0008658 ... C8W8H7 N/A
    27 4n1x:B (2.0) BS01 PNM 2.4.1.129 GO:0008658 ... C8W8H7 N/A
    28 4ram:A (1.495) BS04 PNM 3.5.2.6 GO:0008270 ... C7C422 N/A
    29 4ram:B (1.495) BS04 PNM 3.5.2.6 GO:0008270 ... C7C422 N/A
    30 5ced:A (2.02) BS01 PNM 3.4.16.4 GO:0000270 ... Q6MHT0 26626559
    31 5kmw:A (1.1) BS01 PNM 3.5.2.6 GO:0008800 ... Q47066 N/A
    32 5zqb:A (1.896) BS01 PNM ? GO:0006508 ... Q8Y3M3 30082290
    33 5zqb:B (1.896) BS01 PNM ? GO:0006508 ... Q8Y3M3 30082290
    34 5zqb:C (1.896) BS01 PNM ? GO:0006508 ... Q8Y3M3 30082290
    35 5zqb:D (1.896) BS01 PNM ? GO:0006508 ... Q8Y3M3 30082290
    36 6bsr:A (2.34) BS01 PNM ? GO:0005886 ... Q9K3C9 30355734
    37 6mkg:A (2.94) BS01 PNM ? GO:0005886 ... A0A075Q0W3 30355734
    38 7o4b:A (2.593) BS01 PNM ? GO:0008658 ... A0A0H2WVW5 34667534
    39 7o4b:C (2.593) BS01 PNM ? GO:0008658 ... A0A0H2WVW5 34667534
    40 8f3g:A (3.59) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    41 8f3i:A (2.8) BS01 PNM ? GO:0008658 ... G5CKR9 N/A
    42 8f3l:A (3.4) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    43 8f3n:A (2.99) BS01 PNM ? GO:0008658 ... G5CKR9 N/A
    44 8f3p:A (3.09) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    45 8f3s:A (3.5) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    46 8f3u:A (2.6) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    47 8f3w:A (3.0) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    48 8f3y:A (2.99) BS01 PNM ? GO:0005886 ... G5CKR9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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