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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ynm:C (2.1) BS02 PMR 1.3.7.7 GO:0005524 ... Q7VD37 23341615
    2 2ynm:D (2.1) BS02 PMR 1.3.7.7 GO:0005524 ... Q7VD38 23341615
    3 3aek:A (2.3) BS02 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    4 3aek:B (2.3) BS02 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    5 3aek:B (2.3) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    6 3aek:C (2.3) BS01 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    7 3aek:D (2.3) BS01 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    8 3aek:D (2.3) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    9 3aeq:A (2.9) BS02 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    10 3aeq:B (2.9) BS02 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    11 3aeq:B (2.9) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    12 3aeq:C (2.9) BS01 PMR 1.3.7.7 GO:0005515 ... P26164 20400946
    13 3aeq:D (2.9) BS01 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    14 3aeq:D (2.9) BS03 PMR 1.3.7.7 GO:0005515 ... P26163 20400946
    15 7jk9:A (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    16 7jk9:AA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    17 7jk9:B (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    18 7jk9:BA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    19 7jk9:C (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    20 7jk9:CA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    21 7jk9:D (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    22 7jk9:DA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    23 7jk9:E (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    24 7jk9:EA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    25 7jk9:F (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    26 7jk9:FA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    27 7jk9:G (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    28 7jk9:GA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    29 7jk9:H (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    30 7jk9:HA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    31 7jk9:I (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    32 7jk9:IA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    33 7jk9:J (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    34 7jk9:JA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    35 7jk9:K (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    36 7jk9:KA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    37 7jk9:L (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    38 7jk9:LA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    39 7jk9:M (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    40 7jk9:MA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    41 7jk9:N (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    42 7jk9:NA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    43 7jk9:O (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    44 7jk9:OA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    45 7jk9:P (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    46 7jk9:Q (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    47 7jk9:R (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    48 7jk9:S (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    49 7jk9:T (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    50 7jk9:V (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    51 7jk9:W (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    52 7jk9:X (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    53 7jk9:Y (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    54 7jk9:Z (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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