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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bh9:B (2.6) BS01 PMB ? GO:0005634 ... Q15544 9695952
    2 1hdk:A (1.8) BS01 PMB 3.1.1.5 GO:0002667 ... Q05315 11834744
    3 1hdk:A (1.8) BS02 PMB 3.1.1.5 GO:0002667 ... Q05315 11834744
    4 1hj1:A (2.3) BS02 PMB ? N/A Q62986 11250199
    5 1xzc:A (1.75) BS01 PMB 3.1.1.74 GO:0005576 ... P00590 N/A
    6 1yp2:A (2.11) BS04 PMB 2.7.7.27 GO:0005978 ... P23509 15692569
    7 1yp2:B (2.11) BS01 PMB 2.7.7.27 GO:0005978 ... P23509 15692569
    8 1yp2:B (2.11) BS05 PMB 2.7.7.27 GO:0005978 ... P23509 15692569
    9 1yp2:C (2.11) BS04 PMB 2.7.7.27 GO:0005978 ... P23509 15692569
    10 1yp2:D (2.11) BS04 PMB 2.7.7.27 GO:0005978 ... P23509 15692569
    11 3oxh:A (1.75) BS01 PMB ? GO:0005576 ... P9WIR3 28692281
    12 7v38:A (2.403) BS02 PMB 3.1.13.- N/A P13699 34977900
    13 7v38:B (2.403) BS02 PMB 3.1.13.- N/A P13699 34977900
    14 7v3b:A (1.8) BS02 PMB 3.1.13.- N/A P13699 34977900
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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