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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ft7:A (2.2) BS03 PLU 3.4.11.10 GO:0006508 ... Q01693 11401547 MOAD: Ki=6.6uM
    PDBbind: -logKd/Ki=5.18, Ki=6.6uM
    2 1lcp:A (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    3 1lcp:B (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23    		 GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    4 3b3c:A (1.46) BS03 PLU 3.4.11.10 GO:0006508 ... Q01693 18576673 MOAD: Ki=105uM
    PDBbind: -logKd/Ki=3.98, Ki=105uM
    5 3b7i:A (1.75) BS03 PLU 3.4.11.10 GO:0006508 ... Q01693 18576673 MOAD: Ki=1.5uM
    PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    6 4pu2:A (2.095) BS01 PLU 3.4.11.2 GO:0004177 ... Q9JYV4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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