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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eyw:A (1.9) BS04 PEL 3.1.8.1 GO:0004063 ... P0A434 10871616
    2 1hzy:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    3 1hzy:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    4 1i0b:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    5 1i0b:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    6 1i0d:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    7 1i0d:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    8 1jgm:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    9 1jgm:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    10 2i0t:D (1.35) BS01 PEL 1.4.9.2 GO:0009308 ... P84887 17475620
    11 2i0t:H (1.35) BS01 PEL 1.4.9.2 GO:0009308 ... P84887 17475620
    12 3x3x:A (1.57) BS02 PEL 1.4.3.21 GO:0005507 ... P46881 26269595
    13 3x3x:B (1.57) BS02 PEL 1.4.3.21 GO:0005507 ... P46881 26269595
    14 6agr:A (1.22) BS01 PEL 3.2.1.17 GO:0003796 ... P00698 31887389
    15 6ahh:A (2.1) BS01 PEL 3.2.1.17 GO:0003796 ... P00698 31819148
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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