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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15601 7y7a:fI (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15602 7y7a:fK (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15603 7y7a:fK (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15604 7y7a:fK (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15605 7y7a:fP (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15606 7y7a:fP (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15607 7y7a:fP (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15608 7y7a:fQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15609 7y7a:fQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15610 7y7a:fQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15611 7y7a:fR (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15612 7y7a:fR (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15613 7y7a:fR (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15614 7y7a:fS (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15615 7y7a:fS (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15616 7y7a:fS (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15617 7y7a:fT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15618 7y7a:fT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15619 7y7a:fT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15620 7y7a:fV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15621 7y7a:fV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15622 7y7a:fV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15623 7y7a:fV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    15624 7y7a:fW (4.3) BS01 PEB ? N/A A0A5J4Z027 36922595
    15625 7y7a:fW (4.3) BS02 PEB ? N/A A0A5J4Z027 36922595
    15626 7y7a:fb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15627 7y7a:fb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15628 7y7a:fb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15629 7y7a:fe (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15630 7y7a:fe (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15631 7y7a:fe (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15632 7y7a:fj (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15633 7y7a:fj (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15634 7y7a:fj (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15635 7y7a:fl (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15636 7y7a:fl (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15637 7y7a:fl (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15638 7y7a:fn (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15639 7y7a:fn (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15640 7y7a:fn (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15641 7y7a:fp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15642 7y7a:fp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15643 7y7a:fp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    15644 7y7a:fp (4.3) BS05 PEB ? GO:0009507 ... P11392 36922595
    15645 7y7a:g1 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15646 7y7a:g1 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15647 7y7a:g1 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15648 7y7a:g3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15649 7y7a:g3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15650 7y7a:g3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15651 7y7a:g3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15652 7y7a:g4 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15653 7y7a:g4 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15654 7y7a:g4 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15655 7y7a:g4 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15656 7y7a:g6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15657 7y7a:g6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15658 7y7a:g8 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15659 7y7a:g8 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15660 7y7a:g8 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15661 7y7a:gA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15662 7y7a:gA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15663 7y7a:gA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15664 7y7a:gA (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15665 7y7a:gC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15666 7y7a:gC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15667 7y7a:gC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15668 7y7a:gC (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15669 7y7a:gI (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15670 7y7a:gI (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15671 7y7a:gI (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15672 7y7a:gI (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15673 7y7a:gK (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15674 7y7a:gK (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15675 7y7a:gK (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15676 7y7a:gP (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15677 7y7a:gP (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15678 7y7a:gP (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15679 7y7a:gP (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15680 7y7a:gQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15681 7y7a:gQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15682 7y7a:gR (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15683 7y7a:gR (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15684 7y7a:gR (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15685 7y7a:gS (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15686 7y7a:gS (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15687 7y7a:gS (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15688 7y7a:gS (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15689 7y7a:gT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15690 7y7a:gT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15691 7y7a:gV (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15692 7y7a:gV (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15693 7y7a:gV (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15694 7y7a:gV (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15695 7y7a:gW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15696 7y7a:gW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15697 7y7a:gW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15698 7y7a:gW (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15699 7y7a:gb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15700 7y7a:gb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15701 7y7a:ge (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15702 7y7a:ge (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15703 7y7a:ge (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15704 7y7a:ge (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15705 7y7a:gj (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15706 7y7a:gj (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15707 7y7a:gj (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15708 7y7a:gj (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15709 7y7a:gl (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15710 7y7a:gl (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15711 7y7a:gl (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15712 7y7a:gl (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15713 7y7a:gn (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15714 7y7a:gn (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15715 7y7a:gn (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15716 7y7a:gn (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15717 7y7a:gp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15718 7y7a:gp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15719 7y7a:gp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15720 7y7a:gp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15721 7y7a:h1 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15722 7y7a:h1 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15723 7y7a:h3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15724 7y7a:h3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15725 7y7a:h3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15726 7y7a:h3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    15727 7y7a:h4 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15728 7y7a:h4 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15729 7y7a:h4 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15730 7y7a:h6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15731 7y7a:h6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15732 7y7a:h6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15733 7y7a:h6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15734 7y7a:h8 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15735 7y7a:h8 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15736 7y7a:hA (4.3) BS01 PEB ? N/A A0A5J4Z027 36922595
    15737 7y7a:hA (4.3) BS02 PEB ? N/A A0A5J4Z027 36922595
    15738 7y7a:hA (4.3) BS03 PEB ? N/A A0A5J4Z027 36922595
    15739 7y7a:hC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15740 7y7a:hC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15741 7y7a:hC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15742 7y7a:hC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    15743 7y7a:hI (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15744 7y7a:hI (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15745 7y7a:hI (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15746 7y7a:hK (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15747 7y7a:hK (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15748 7y7a:hP (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15749 7y7a:hP (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15750 7y7a:hP (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15751 7y7a:hQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15752 7y7a:hQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15753 7y7a:hQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15754 7y7a:hQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15755 7y7a:hR (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15756 7y7a:hR (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15757 7y7a:hS (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15758 7y7a:hS (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15759 7y7a:hS (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15760 7y7a:hT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15761 7y7a:hT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15762 7y7a:hT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15763 7y7a:hT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15764 7y7a:hV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15765 7y7a:hV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15766 7y7a:hV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15767 7y7a:hV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    15768 7y7a:hW (4.3) BS01 PEB ? N/A A0A5J4Z027 36922595
    15769 7y7a:hW (4.3) BS02 PEB ? N/A A0A5J4Z027 36922595
    15770 7y7a:hb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15771 7y7a:hb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15772 7y7a:hb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15773 7y7a:hb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15774 7y7a:he (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15775 7y7a:he (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15776 7y7a:he (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15777 7y7a:hj (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15778 7y7a:hj (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15779 7y7a:hj (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15780 7y7a:hl (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15781 7y7a:hl (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15782 7y7a:hl (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15783 7y7a:hn (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15784 7y7a:hn (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15785 7y7a:hn (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15786 7y7a:hp (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    15787 7y7a:hp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    15788 7y7a:hp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    15789 7y7a:hp (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    15790 7y7a:i1 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15791 7y7a:i1 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15792 7y7a:i1 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15793 7y7a:i1 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15794 7y7a:i3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15795 7y7a:i3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15796 7y7a:i3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    15797 7y7a:i3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    15798 7y7a:i4 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    15799 7y7a:i4 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    15800 7y7a:i4 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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