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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12601 7y7a:Fk (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12602 7y7a:Fk (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12603 7y7a:Fk (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12604 7y7a:Fl (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12605 7y7a:Fl (4.3) BS02 PEB ? GO:0009507 ... P37208 36922595
    12606 7y7a:Fn (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12607 7y7a:Fp (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12608 7y7a:Fp (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12609 7y7a:Fp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12610 7y7a:Fp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12611 7y7a:G1 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12612 7y7a:G2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12613 7y7a:G2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12614 7y7a:G2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12615 7y7a:G2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12616 7y7a:G3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12617 7y7a:G3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12618 7y7a:G3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12619 7y7a:G4 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12620 7y7a:G4 (4.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    12621 7y7a:G5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12622 7y7a:G5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12623 7y7a:G5 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12624 7y7a:G5 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12625 7y7a:G6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12626 7y7a:G6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12627 7y7a:G6 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12628 7y7a:G8 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12629 7y7a:GA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12630 7y7a:GA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12631 7y7a:GA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12632 7y7a:GC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12633 7y7a:GC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12634 7y7a:GC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12635 7y7a:GC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12636 7y7a:GD (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12637 7y7a:GD (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12638 7y7a:GD (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12639 7y7a:GD (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12640 7y7a:GF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12641 7y7a:GF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12642 7y7a:GF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12643 7y7a:GF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12644 7y7a:GH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12645 7y7a:GH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12646 7y7a:GH (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12647 7y7a:GH (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12648 7y7a:GI (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12649 7y7a:GJ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12650 7y7a:GJ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12651 7y7a:GJ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12652 7y7a:GK (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12653 7y7a:GL (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12654 7y7a:GL (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12655 7y7a:GL (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12656 7y7a:GM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12657 7y7a:GM (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12658 7y7a:GM (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12659 7y7a:GM (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12660 7y7a:GP (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12661 7y7a:GQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12662 7y7a:GQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12663 7y7a:GQ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12664 7y7a:GR (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12665 7y7a:GS (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12666 7y7a:GT (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12667 7y7a:GT (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12668 7y7a:GT (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12669 7y7a:GU (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12670 7y7a:GU (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12671 7y7a:GU (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12672 7y7a:GV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12673 7y7a:GV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12674 7y7a:GV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12675 7y7a:GV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12676 7y7a:GW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12677 7y7a:GW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12678 7y7a:GW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12679 7y7a:Ga (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12680 7y7a:Ga (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12681 7y7a:Ga (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12682 7y7a:Gb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12683 7y7a:Gb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12684 7y7a:Gb (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12685 7y7a:Gc (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12686 7y7a:Gc (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12687 7y7a:Gc (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12688 7y7a:Gc (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12689 7y7a:Ge (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12690 7y7a:Ge (4.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    12691 7y7a:Gf (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12692 7y7a:Gf (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12693 7y7a:Gf (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12694 7y7a:Gg (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12695 7y7a:Gg (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12696 7y7a:Gg (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12697 7y7a:Gg (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12698 7y7a:Gh (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12699 7y7a:Gh (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12700 7y7a:Gh (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12701 7y7a:Gh (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12702 7y7a:Gi (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12703 7y7a:Gi (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12704 7y7a:Gi (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12705 7y7a:Gi (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12706 7y7a:Gj (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12707 7y7a:Gj (4.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    12708 7y7a:Gk (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12709 7y7a:Gk (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12710 7y7a:Gk (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12711 7y7a:Gl (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12712 7y7a:Gn (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12713 7y7a:Gn (4.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    12714 7y7a:Gp (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12715 7y7a:Gp (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12716 7y7a:Gp (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12717 7y7a:H1 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12718 7y7a:H2 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12719 7y7a:H2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12720 7y7a:H2 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12721 7y7a:H3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12722 7y7a:H3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12723 7y7a:H3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12724 7y7a:H3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12725 7y7a:H4 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12726 7y7a:H5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12727 7y7a:H5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12728 7y7a:H5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12729 7y7a:H5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12730 7y7a:H6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12731 7y7a:H6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12732 7y7a:H6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12733 7y7a:H8 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12734 7y7a:HA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12735 7y7a:HA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12736 7y7a:HA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12737 7y7a:HA (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12738 7y7a:HA (4.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    12739 7y7a:HC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12740 7y7a:HC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12741 7y7a:HC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12742 7y7a:HC (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12743 7y7a:HD (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12744 7y7a:HD (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12745 7y7a:HD (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12746 7y7a:HD (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12747 7y7a:HF (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12748 7y7a:HF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12749 7y7a:HF (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12750 7y7a:HH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12751 7y7a:HH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12752 7y7a:HH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12753 7y7a:HI (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12754 7y7a:HJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12755 7y7a:HJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12756 7y7a:HJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12757 7y7a:HJ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12758 7y7a:HK (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12759 7y7a:HL (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12760 7y7a:HL (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12761 7y7a:HL (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12762 7y7a:HM (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12763 7y7a:HM (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12764 7y7a:HM (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12765 7y7a:HP (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12766 7y7a:HQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12767 7y7a:HQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12768 7y7a:HQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12769 7y7a:HR (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12770 7y7a:HS (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12771 7y7a:HT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12772 7y7a:HT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12773 7y7a:HT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12774 7y7a:HU (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12775 7y7a:HU (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12776 7y7a:HU (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12777 7y7a:HV (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12778 7y7a:HV (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12779 7y7a:HV (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12780 7y7a:HV (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12781 7y7a:HW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12782 7y7a:HW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12783 7y7a:HW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12784 7y7a:HW (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12785 7y7a:HW (4.3) BS05 PEB ? GO:0009507 ... P11393 36922595
    12786 7y7a:Ha (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12787 7y7a:Ha (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12788 7y7a:Ha (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12789 7y7a:Ha (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12790 7y7a:Hb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12791 7y7a:Hb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12792 7y7a:Hb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12793 7y7a:Hc (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12794 7y7a:Hc (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12795 7y7a:Hc (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12796 7y7a:He (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12797 7y7a:Hf (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12798 7y7a:Hf (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12799 7y7a:Hf (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12800 7y7a:Hf (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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