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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12401 7y7a:Dp (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12402 7y7a:Dp (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12403 7y7a:E1 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12404 7y7a:E2 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12405 7y7a:E2 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12406 7y7a:E2 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12407 7y7a:E2 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12408 7y7a:E3 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12409 7y7a:E3 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12410 7y7a:E3 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12411 7y7a:E3 (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12412 7y7a:E4 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12413 7y7a:E5 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12414 7y7a:E5 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12415 7y7a:E5 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12416 7y7a:E6 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12417 7y7a:E6 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12418 7y7a:E8 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12419 7y7a:EA (4.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    12420 7y7a:EA (4.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    12421 7y7a:EC (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12422 7y7a:EC (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12423 7y7a:EC (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12424 7y7a:EC (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12425 7y7a:ED (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12426 7y7a:ED (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12427 7y7a:ED (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12428 7y7a:EF (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12429 7y7a:EF (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12430 7y7a:EF (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12431 7y7a:EF (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12432 7y7a:EH (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12433 7y7a:EH (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12434 7y7a:EH (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12435 7y7a:EI (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12436 7y7a:EJ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12437 7y7a:EJ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12438 7y7a:EJ (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12439 7y7a:EK (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12440 7y7a:EL (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12441 7y7a:EL (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12442 7y7a:EL (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12443 7y7a:EM (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12444 7y7a:EM (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12445 7y7a:EM (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12446 7y7a:EM (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12447 7y7a:EP (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12448 7y7a:EQ (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12449 7y7a:EQ (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12450 7y7a:ER (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12451 7y7a:ES (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12452 7y7a:ET (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12453 7y7a:ET (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12454 7y7a:EU (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12455 7y7a:EU (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12456 7y7a:EU (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12457 7y7a:EV (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12458 7y7a:EV (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12459 7y7a:EV (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12460 7y7a:EV (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12461 7y7a:EW (4.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    12462 7y7a:EW (4.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    12463 7y7a:Ea (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12464 7y7a:Ea (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12465 7y7a:Ea (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12466 7y7a:Ea (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12467 7y7a:Eb (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12468 7y7a:Eb (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12469 7y7a:Ec (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12470 7y7a:Ec (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12471 7y7a:Ec (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12472 7y7a:Ec (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12473 7y7a:Ee (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12474 7y7a:Ef (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12475 7y7a:Ef (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12476 7y7a:Ef (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12477 7y7a:Ef (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12478 7y7a:Eg (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12479 7y7a:Eg (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12480 7y7a:Eg (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12481 7y7a:Eh (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12482 7y7a:Eh (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12483 7y7a:Eh (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12484 7y7a:Ei (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12485 7y7a:Ei (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12486 7y7a:Ei (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12487 7y7a:Ej (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12488 7y7a:Ek (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12489 7y7a:Ek (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12490 7y7a:Ek (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12491 7y7a:El (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12492 7y7a:En (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12493 7y7a:Ep (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12494 7y7a:Ep (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12495 7y7a:Ep (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12496 7y7a:Ep (4.3) BS04 PEB ? GO:0009507 ... P11392 36922595
    12497 7y7a:F1 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12498 7y7a:F2 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12499 7y7a:F2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12500 7y7a:F2 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12501 7y7a:F3 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12502 7y7a:F3 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12503 7y7a:F3 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12504 7y7a:F3 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12505 7y7a:F4 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12506 7y7a:F5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12507 7y7a:F5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12508 7y7a:F5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12509 7y7a:F5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12510 7y7a:F6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12511 7y7a:F6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12512 7y7a:F6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12513 7y7a:F6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12514 7y7a:F8 (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12515 7y7a:FA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12516 7y7a:FA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12517 7y7a:FA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12518 7y7a:FA (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12519 7y7a:FC (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12520 7y7a:FC (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12521 7y7a:FC (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12522 7y7a:FC (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12523 7y7a:FD (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12524 7y7a:FD (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12525 7y7a:FD (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12526 7y7a:FD (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12527 7y7a:FF (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12528 7y7a:FF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12529 7y7a:FF (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12530 7y7a:FH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12531 7y7a:FH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12532 7y7a:FH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12533 7y7a:FH (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12534 7y7a:FI (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12535 7y7a:FI (4.3) BS02 PEB ? GO:0009507 ... P37208 36922595
    12536 7y7a:FJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12537 7y7a:FJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12538 7y7a:FJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12539 7y7a:FK (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12540 7y7a:FL (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12541 7y7a:FL (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12542 7y7a:FL (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12543 7y7a:FL (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12544 7y7a:FM (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12545 7y7a:FM (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12546 7y7a:FM (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12547 7y7a:FP (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12548 7y7a:FP (4.3) BS02 PEB ? GO:0009507 ... P37208 36922595
    12549 7y7a:FQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12550 7y7a:FQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12551 7y7a:FQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12552 7y7a:FQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12553 7y7a:FR (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12554 7y7a:FS (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12555 7y7a:FS (4.3) BS02 PEB ? GO:0009507 ... P37208 36922595
    12556 7y7a:FT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12557 7y7a:FT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12558 7y7a:FT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12559 7y7a:FT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12560 7y7a:FU (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12561 7y7a:FU (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12562 7y7a:FU (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12563 7y7a:FU (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12564 7y7a:FV (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12565 7y7a:FV (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12566 7y7a:FV (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12567 7y7a:FV (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12568 7y7a:FW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12569 7y7a:FW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12570 7y7a:FW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12571 7y7a:FW (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12572 7y7a:Fa (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12573 7y7a:Fa (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12574 7y7a:Fa (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12575 7y7a:Fa (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12576 7y7a:Fb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12577 7y7a:Fb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12578 7y7a:Fb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12579 7y7a:Fb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12580 7y7a:Fc (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12581 7y7a:Fc (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12582 7y7a:Fc (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12583 7y7a:Fe (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    12584 7y7a:Ff (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12585 7y7a:Ff (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12586 7y7a:Ff (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12587 7y7a:Ff (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12588 7y7a:Fg (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12589 7y7a:Fg (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12590 7y7a:Fg (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12591 7y7a:Fg (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12592 7y7a:Fh (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12593 7y7a:Fh (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12594 7y7a:Fh (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12595 7y7a:Fh (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12596 7y7a:Fi (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12597 7y7a:Fi (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12598 7y7a:Fi (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12599 7y7a:Fi (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12600 7y7a:Fj (4.3) BS01 PEB ? GO:0009507 ... P37208 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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