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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12001 7y7a:AV (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    12002 7y7a:AV (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    12003 7y7a:AV (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    12004 7y7a:AV (4.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    12005 7y7a:AV (4.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    12006 7y7a:AV (4.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    12007 7y7a:AW (4.3) BS01 PEB ? N/A A0A5J4YXP2 36922595
    12008 7y7a:AW (4.3) BS02 PEB ? N/A A0A5J4YXP2 36922595
    12009 7y7a:AY (4.3) BS01 PEB N/A N/A N/A 36922595
    12010 7y7a:AY (4.3) BS02 PEB N/A N/A N/A 36922595
    12011 7y7a:Aa (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12012 7y7a:Aa (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12013 7y7a:Ab (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12014 7y7a:Ab (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12015 7y7a:Ac (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    12016 7y7a:Ac (4.3) BS03 PEB ? N/A A0A5J4YX19 36922595
    12017 7y7a:Ac (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    12018 7y7a:Ac (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    12019 7y7a:Ac (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    12020 7y7a:Ac (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    12021 7y7a:Ac (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    12022 7y7a:Ac (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    12023 7y7a:Ac (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    12024 7y7a:Ae (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    12025 7y7a:Ae (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    12026 7y7a:Ae (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    12027 7y7a:Ae (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    12028 7y7a:Ae (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    12029 7y7a:Ae (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    12030 7y7a:Ae (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    12031 7y7a:Ae (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    12032 7y7a:Ae (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    12033 7y7a:Ae (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    12034 7y7a:Af (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12035 7y7a:Af (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12036 7y7a:Ag (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12037 7y7a:Ag (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12038 7y7a:Ah (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12039 7y7a:Ah (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12040 7y7a:Ah (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12041 7y7a:Ai (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12042 7y7a:Ai (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12043 7y7a:Aj (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    12044 7y7a:Aj (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    12045 7y7a:Aj (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    12046 7y7a:Aj (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    12047 7y7a:Aj (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    12048 7y7a:Aj (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    12049 7y7a:Aj (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    12050 7y7a:Aj (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    12051 7y7a:Aj (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    12052 7y7a:Aj (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    12053 7y7a:Ak (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12054 7y7a:Ak (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12055 7y7a:Ak (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12056 7y7a:Al (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    12057 7y7a:Al (4.3) BS02 PEB ? N/A A0A5J4YX19 36922595
    12058 7y7a:Al (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    12059 7y7a:Al (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    12060 7y7a:Al (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    12061 7y7a:Al (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    12062 7y7a:Al (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    12063 7y7a:Al (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    12064 7y7a:Al (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    12065 7y7a:Al (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    12066 7y7a:An (4.3) BS01 PEB ? N/A A0A5J4YX19 36922595
    12067 7y7a:An (4.3) BS04 PEB ? N/A A0A5J4YX19 36922595
    12068 7y7a:An (4.3) BS05 PEB ? N/A A0A5J4YX19 36922595
    12069 7y7a:An (4.3) BS06 PEB ? N/A A0A5J4YX19 36922595
    12070 7y7a:An (4.3) BS07 PEB ? N/A A0A5J4YX19 36922595
    12071 7y7a:An (4.3) BS08 PEB ? N/A A0A5J4YX19 36922595
    12072 7y7a:An (4.3) BS09 PEB ? N/A A0A5J4YX19 36922595
    12073 7y7a:An (4.3) BS10 PEB ? N/A A0A5J4YX19 36922595
    12074 7y7a:An (4.3) BS11 PEB ? N/A A0A5J4YX19 36922595
    12075 7y7a:An (4.3) BS12 PEB ? N/A A0A5J4YX19 36922595
    12076 7y7a:Ap (4.3) BS01 PEB ? N/A A0A5J4YZM7 36922595
    12077 7y7a:Ap (4.3) BS02 PEB ? N/A A0A5J4YZM7 36922595
    12078 7y7a:Ap (4.3) BS06 PEB ? N/A A0A5J4YZM7 36922595
    12079 7y7a:Ap (4.3) BS07 PEB ? N/A A0A5J4YZM7 36922595
    12080 7y7a:Ap (4.3) BS08 PEB ? N/A A0A5J4YZM7 36922595
    12081 7y7a:Ap (4.3) BS09 PEB ? N/A A0A5J4YZM7 36922595
    12082 7y7a:Ap (4.3) BS10 PEB ? N/A A0A5J4YZM7 36922595
    12083 7y7a:Ap (4.3) BS11 PEB ? N/A A0A5J4YZM7 36922595
    12084 7y7a:Ap (4.3) BS12 PEB ? N/A A0A5J4YZM7 36922595
    12085 7y7a:B2 (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12086 7y7a:B2 (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12087 7y7a:B2 (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12088 7y7a:B3 (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    12089 7y7a:B3 (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    12090 7y7a:B3 (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    12091 7y7a:B3 (4.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    12092 7y7a:B3 (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    12093 7y7a:B3 (4.3) BS08 PEB ? N/A A0A5J4YZH3 36922595
    12094 7y7a:B3 (4.3) BS09 PEB ? N/A A0A5J4YZH3 36922595
    12095 7y7a:B5 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12096 7y7a:B5 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12097 7y7a:B5 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12098 7y7a:B5 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12099 7y7a:B6 (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12100 7y7a:B6 (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12101 7y7a:B6 (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12102 7y7a:B6 (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12103 7y7a:BA (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12104 7y7a:BA (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12105 7y7a:BA (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12106 7y7a:BC (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    12107 7y7a:BC (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    12108 7y7a:BC (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    12109 7y7a:BC (4.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    12110 7y7a:BC (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    12111 7y7a:BC (4.3) BS08 PEB ? N/A A0A5J4YZH3 36922595
    12112 7y7a:BC (4.3) BS09 PEB ? N/A A0A5J4YZH3 36922595
    12113 7y7a:BC (4.3) BS10 PEB ? N/A A0A5J4YZH3 36922595
    12114 7y7a:BC (4.3) BS11 PEB ? N/A A0A5J4YZH3 36922595
    12115 7y7a:BD (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12116 7y7a:BD (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12117 7y7a:BD (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12118 7y7a:BD (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12119 7y7a:BF (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12120 7y7a:BF (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12121 7y7a:BF (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12122 7y7a:BH (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12123 7y7a:BH (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12124 7y7a:BH (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12125 7y7a:BH (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12126 7y7a:BJ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12127 7y7a:BJ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12128 7y7a:BJ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12129 7y7a:BJ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12130 7y7a:BL (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12131 7y7a:BL (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12132 7y7a:BL (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12133 7y7a:BL (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12134 7y7a:BM (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12135 7y7a:BM (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12136 7y7a:BM (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12137 7y7a:BQ (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12138 7y7a:BQ (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12139 7y7a:BQ (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12140 7y7a:BQ (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12141 7y7a:BT (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12142 7y7a:BT (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12143 7y7a:BT (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12144 7y7a:BT (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12145 7y7a:BU (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12146 7y7a:BU (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12147 7y7a:BU (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12148 7y7a:BU (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12149 7y7a:BV (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    12150 7y7a:BV (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    12151 7y7a:BV (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    12152 7y7a:BV (4.3) BS05 PEB ? N/A A0A5J4YZH3 36922595
    12153 7y7a:BV (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    12154 7y7a:BV (4.3) BS08 PEB ? N/A A0A5J4YZH3 36922595
    12155 7y7a:BV (4.3) BS09 PEB ? N/A A0A5J4YZH3 36922595
    12156 7y7a:BV (4.3) BS10 PEB ? N/A A0A5J4YZH3 36922595
    12157 7y7a:BV (4.3) BS11 PEB ? N/A A0A5J4YZH3 36922595
    12158 7y7a:BW (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12159 7y7a:BW (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12160 7y7a:BW (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12161 7y7a:Ba (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12162 7y7a:Ba (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12163 7y7a:Ba (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12164 7y7a:Ba (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12165 7y7a:Bb (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12166 7y7a:Bb (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12167 7y7a:Bb (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12168 7y7a:Bb (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12169 7y7a:Bc (4.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    12170 7y7a:Bc (4.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    12171 7y7a:Bc (4.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    12172 7y7a:Bf (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12173 7y7a:Bf (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12174 7y7a:Bf (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12175 7y7a:Bf (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12176 7y7a:Bg (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12177 7y7a:Bg (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12178 7y7a:Bg (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12179 7y7a:Bg (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12180 7y7a:Bh (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12181 7y7a:Bh (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12182 7y7a:Bh (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12183 7y7a:Bh (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12184 7y7a:Bi (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12185 7y7a:Bi (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12186 7y7a:Bi (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12187 7y7a:Bi (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12188 7y7a:Bk (4.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    12189 7y7a:Bk (4.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    12190 7y7a:Bk (4.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    12191 7y7a:Bk (4.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    12192 7y7a:Bp (4.3) BS01 PEB ? N/A A0A5J4YZH3 36922595
    12193 7y7a:Bp (4.3) BS03 PEB ? N/A A0A5J4YZH3 36922595
    12194 7y7a:Bp (4.3) BS04 PEB ? N/A A0A5J4YZH3 36922595
    12195 7y7a:Bp (4.3) BS06 PEB ? N/A A0A5J4YZH3 36922595
    12196 7y7a:Bp (4.3) BS07 PEB ? N/A A0A5J4YZH3 36922595
    12197 7y7a:Bp (4.3) BS08 PEB ? N/A A0A5J4YZH3 36922595
    12198 7y7a:Bp (4.3) BS09 PEB ? N/A A0A5J4YZH3 36922595
    12199 7y7a:C1 (4.3) BS01 PEB ? GO:0009507 ... P37207 36922595
    12200 7y7a:C1 (4.3) BS02 PEB ? GO:0009507 ... P37207 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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