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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6801 7ezx:rJ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    6802 7ezx:rJ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    6803 7ezx:rJ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    6804 7ezx:rL (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    6805 7ezx:rL (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    6806 7ezx:rL (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    6807 7ezx:sJ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    6808 7ezx:sJ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    6809 7ezx:sL (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    6810 7ezx:sL (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    6811 7ezx:tJ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    6812 7ezx:tJ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    6813 7ezx:tJ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    6814 7ezx:tJ (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    6815 7ezx:tL (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    6816 7ezx:tL (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    6817 7ezx:tL (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    6818 7ezx:tL (3.0) BS04 PEB ? GO:0009507 ... P11393 N/A
    6819 7ezx:uJ (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    6820 7ezx:uJ (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    6821 7ezx:uL (3.0) BS01 PEB ? GO:0009507 ... E2IH77 N/A
    6822 7ezx:uL (3.0) BS02 PEB ? GO:0009507 ... E2IH77 N/A
    6823 7ezx:vJ (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    6824 7ezx:vJ (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    6825 7ezx:vJ (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    6826 7ezx:vL (3.0) BS01 PEB ? GO:0009507 ... P11393 N/A
    6827 7ezx:vL (3.0) BS02 PEB ? GO:0009507 ... P11393 N/A
    6828 7ezx:vL (3.0) BS03 PEB ? GO:0009507 ... P11393 N/A
    6829 7ezx:wJ (3.0) BS01 PEB ? N/A A0A5J4YZM7 N/A
    6830 7ezx:wJ (3.0) BS02 PEB ? N/A A0A5J4YZM7 N/A
    6831 7ezx:wJ (3.0) BS03 PEB ? N/A A0A5J4YZM7 N/A
    6832 7ezx:wJ (3.0) BS04 PEB ? N/A A0A5J4YZM7 N/A
    6833 7ezx:wJ (3.0) BS05 PEB ? N/A A0A5J4YZM7 N/A
    6834 7ezx:wJ (3.0) BS06 PEB ? N/A A0A5J4YZM7 N/A
    6835 7ezx:wJ (3.0) BS07 PEB ? N/A A0A5J4YZM7 N/A
    6836 7ezx:wL (3.0) BS01 PEB ? N/A A0A5J4YZM7 N/A
    6837 7ezx:wL (3.0) BS02 PEB ? N/A A0A5J4YZM7 N/A
    6838 7ezx:wL (3.0) BS03 PEB ? N/A A0A5J4YZM7 N/A
    6839 7ezx:wL (3.0) BS04 PEB ? N/A A0A5J4YZM7 N/A
    6840 7ezx:wL (3.0) BS05 PEB ? N/A A0A5J4YZM7 N/A
    6841 7ezx:wL (3.0) BS06 PEB ? N/A A0A5J4YZM7 N/A
    6842 7ezx:wL (3.0) BS07 PEB ? N/A A0A5J4YZM7 N/A
    6843 7ezx:xJ (3.0) BS01 PEB ? N/A A0A5J4YZM7 N/A
    6844 7ezx:xJ (3.0) BS02 PEB ? N/A A0A5J4YZM7 N/A
    6845 7ezx:xJ (3.0) BS03 PEB ? N/A A0A5J4YZM7 N/A
    6846 7ezx:xJ (3.0) BS04 PEB ? N/A A0A5J4YZM7 N/A
    6847 7ezx:xJ (3.0) BS06 PEB ? N/A A0A5J4YZM7 N/A
    6848 7ezx:xJ (3.0) BS07 PEB ? N/A A0A5J4YZM7 N/A
    6849 7ezx:xJ (3.0) BS08 PEB ? N/A A0A5J4YZM7 N/A
    6850 7ezx:xL (3.0) BS01 PEB ? N/A A0A5J4YZM7 N/A
    6851 7ezx:xL (3.0) BS02 PEB ? N/A A0A5J4YZM7 N/A
    6852 7ezx:xL (3.0) BS03 PEB ? N/A A0A5J4YZM7 N/A
    6853 7ezx:xL (3.0) BS04 PEB ? N/A A0A5J4YZM7 N/A
    6854 7ezx:xL (3.0) BS05 PEB ? N/A A0A5J4YZM7 N/A
    6855 7ezx:xL (3.0) BS06 PEB ? N/A A0A5J4YZM7 N/A
    6856 7ezx:xL (3.0) BS07 PEB ? N/A A0A5J4YZM7 N/A
    6857 7ezx:xL (3.0) BS08 PEB ? N/A A0A5J4YZM7 N/A
    6858 7ezx:yJ (3.0) BS01 PEB ? N/A A0A5J4YZH3 N/A
    6859 7ezx:yJ (3.0) BS02 PEB ? N/A A0A5J4YZH3 N/A
    6860 7ezx:yJ (3.0) BS03 PEB ? N/A A0A5J4YZH3 N/A
    6861 7ezx:yJ (3.0) BS04 PEB ? N/A A0A5J4YZH3 N/A
    6862 7ezx:yJ (3.0) BS05 PEB ? N/A A0A5J4YZH3 N/A
    6863 7ezx:yJ (3.0) BS06 PEB ? N/A A0A5J4YZH3 N/A
    6864 7ezx:yL (3.0) BS01 PEB ? N/A A0A5J4YZH3 N/A
    6865 7ezx:yL (3.0) BS02 PEB ? N/A A0A5J4YZH3 N/A
    6866 7ezx:yL (3.0) BS03 PEB ? N/A A0A5J4YZH3 N/A
    6867 7ezx:yL (3.0) BS04 PEB ? N/A A0A5J4YZH3 N/A
    6868 7ezx:yL (3.0) BS05 PEB ? N/A A0A5J4YZH3 N/A
    6869 7ezx:yL (3.0) BS06 PEB ? N/A A0A5J4YZH3 N/A
    6870 7ezx:zJ (3.0) BS01 PEB ? GO:0009507 ... A0A5J4YI31 N/A
    6871 7ezx:zJ (3.0) BS02 PEB ? GO:0009507 ... A0A5J4YI31 N/A
    6872 7ezx:zJ (3.0) BS03 PEB ? GO:0009507 ... A0A5J4YI31 N/A
    6873 7ezx:zL (3.0) BS01 PEB ? GO:0009507 ... A0A5J4YI31 N/A
    6874 7ezx:zL (3.0) BS02 PEB ? GO:0009507 ... A0A5J4YI31 N/A
    6875 7ezx:zL (3.0) BS03 PEB ? GO:0009507 ... A0A5J4YI31 N/A
    6876 7f86:A (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6877 7f86:A (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6878 7f86:A (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6879 7f86:A (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6880 7f86:B (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6881 7f86:B (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6882 7f86:B (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6883 7f86:B (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6884 7f86:C (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6885 7f86:C (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6886 7f86:C (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6887 7f86:C (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6888 7f86:D (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6889 7f86:D (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6890 7f86:D (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6891 7f86:D (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6892 7f86:E (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6893 7f86:E (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6894 7f86:E (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6895 7f86:F (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6896 7f86:F (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6897 7f86:F (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6898 7f86:F (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6899 7f86:G (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6900 7f86:G (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6901 7f86:G (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6902 7f86:G (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6903 7f86:H (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6904 7f86:H (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6905 7f86:H (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6906 7f86:H (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6907 7f86:I (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6908 7f86:I (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6909 7f86:I (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6910 7f86:I (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6911 7f86:J (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6912 7f86:J (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6913 7f86:J (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6914 7f86:J (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6915 7f86:K (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6916 7f86:K (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6917 7f86:K (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6918 7f86:K (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6919 7f86:L (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6920 7f86:L (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6921 7f86:L (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6922 7f86:L (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6923 7f86:M (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6924 7f86:M (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6925 7f86:M (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6926 7f86:M (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6927 7f86:N (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6928 7f86:N (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6929 7f86:N (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6930 7f86:N (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6931 7f86:O (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6932 7f86:O (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6933 7f86:O (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6934 7f86:O (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6935 7f86:P (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6936 7f86:P (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6937 7f86:P (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6938 7f86:P (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6939 7f86:Q (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6940 7f86:Q (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6941 7f86:Q (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6942 7f86:R (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6943 7f86:R (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6944 7f86:R (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6945 7f86:T (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6946 7f86:T (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6947 7f86:T (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6948 7f86:U (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6949 7f86:U (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6950 7f86:U (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6951 7f86:U (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6952 7f86:V (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6953 7f86:V (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6954 7f86:V (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6955 7f86:V (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6956 7f86:W (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6957 7f86:W (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6958 7f86:W (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6959 7f86:W (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6960 7f86:X (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6961 7f86:X (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6962 7f86:X (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IW87 35354393
    6963 7f86:Y (2.21) BS01 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6964 7f86:Y (2.21) BS02 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6965 7f86:Y (2.21) BS03 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6966 7f86:Y (2.21) BS04 PEB ? GO:0009579 ... A0A1W1IVY1 35354393
    6967 7lix:A (2.8) BS01 PEB ? N/A A0A5J4YJY8 33767155
    6968 7lix:A (2.8) BS02 PEB ? N/A A0A5J4YJY8 33767155
    6969 7lix:A (2.8) BS03 PEB ? N/A A0A5J4YJY8 33767155
    6970 7lix:A (2.8) BS04 PEB ? N/A A0A5J4YJY8 33767155
    6971 7lix:A (2.8) BS05 PEB ? N/A A0A5J4YJY8 33767155
    6972 7lix:B (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6973 7lix:B (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6974 7lix:B (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    6975 7lix:C (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6976 7lix:C (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6977 7lix:C (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    6978 7lix:D (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6979 7lix:D (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6980 7lix:D (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    6981 7liy:A (2.8) BS01 PEB ? N/A A0A5J4YX67 33767155
    6982 7liy:A (2.8) BS02 PEB ? N/A A0A5J4YX67 33767155
    6983 7liy:A (2.8) BS03 PEB ? N/A A0A5J4YX67 33767155
    6984 7liy:B (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6985 7liy:B (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6986 7liy:B (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    6987 7liy:C (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6988 7liy:C (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6989 7liy:C (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    6990 7liz:A (2.8) BS01 PEB ? GO:0009507 ... A0A5J4YMI8 33767155
    6991 7liz:A (2.8) BS02 PEB ? GO:0009507 ... A0A5J4YMI8 33767155
    6992 7liz:A (2.8) BS03 PEB ? GO:0009507 ... A0A5J4YMI8 33767155
    6993 7liz:A (2.8) BS04 PEB ? GO:0009507 ... A0A5J4YMI8 33767155
    6994 7liz:B (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6995 7liz:B (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6996 7liz:B (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    6997 7liz:C (2.8) BS01 PEB ? GO:0009507 ... P11393 33767155
    6998 7liz:C (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    6999 7liz:C (2.8) BS03 PEB ? GO:0009507 ... P11393 33767155
    7000 7lj0:B (2.8) BS02 PEB ? GO:0009507 ... P11393 33767155
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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