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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 183 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4b2z:A (1.95) BS01 P5S ? GO:0001786 ... Q02201 23934110
    2 4b2z:B (1.95) BS01 P5S ? GO:0001786 ... Q02201 23934110
    3 6i3y:C (2.98) BS01 P5S ? GO:0005758 ... Q9Y255 30850607
    4 6i3y:F (2.98) BS01 P5S ? GO:0005758 ... Q9Y255 30850607
    5 6lcp:A (3.48) BS04 P5S 7.6.2.1 GO:0000166 ... G0S196 32303992
    6 6lcr:A (3.4) BS02 P5S 7.6.2.1 GO:0000166 ... G0S196 32303992
    7 6lkn:A (3.9) BS01 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    8 6lkn:A (3.9) BS03 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    9 6lkn:C (3.9) BS01 P5S ? GO:0005198 ... Q9NV96 32493773
    10 6lkn:E (3.9) BS01 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    11 6lkn:E (3.9) BS02 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    12 6lkn:I (3.9) BS01 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    13 6lkn:I (3.9) BS02 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    14 6lkn:M (3.9) BS01 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32493773
    15 6sp2:A (3.33) BS02 P5S ? GO:0016020 ... Q9U6P4 31907454
    16 6sp2:B (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    17 6sp2:C (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    18 6sp2:D (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    19 6sp2:E (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    20 6sp2:F (3.33) BS05 P5S ? GO:0016020 ... Q9U6P4 31907454
    21 6tt7:3 (3.5) BS01 P5S ? GO:0005737 ... P17605 32929284
    22 6tt7:4 (3.5) BS01 P5S ? GO:0005737 ... P17605 32929284
    23 6vp0:C (3.1) BS01 P5S 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433610
    24 6vp0:C (3.1) BS02 P5S 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433610
    25 6vp0:E (3.1) BS01 P5S 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433610
    26 7bsu:A (3.2) BS02 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    27 7bsv:A (3.0) BS03 P5S 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    28 7dfw:A (2.69) BS01 P5S ? GO:0005319 ... Q9UHC9 34272236
    29 7mit:A (3.4) BS02 P5S ? GO:0001508 ... Q63664 34711681
    30 7mit:B (3.4) BS03 P5S ? GO:0001508 ... Q63664 34711681
    31 7mit:B (3.4) BS04 P5S ? GO:0001508 ... Q63664 34711681
    32 7mit:C (3.4) BS03 P5S ? GO:0001508 ... Q63664 34711681
    33 7mit:C (3.4) BS04 P5S ? GO:0001508 ... Q63664 34711681
    34 7mit:D (3.4) BS02 P5S ? GO:0001508 ... Q63664 34711681
    35 7mit:E (3.4) BS03 P5S ? GO:0000165 ... Q63563 34711681
    36 7mit:E (3.4) BS04 P5S ? GO:0000165 ... Q63563 34711681
    37 7p14:A (3.66) BS01 P5S ? GO:0005886 ... Q5GH54 34263724
    38 7tys:A (3.41) BS02 P5S ? GO:0001508 ... P70673 35964676
    39 7tys:A (3.41) BS03 P5S ? GO:0001508 ... P70673 35964676
    40 7tys:A (3.41) BS04 P5S ? GO:0001508 ... P70673 35964676
    41 7tys:B (3.41) BS02 P5S ? GO:0001508 ... P70673 35964676
    42 7tys:B (3.41) BS03 P5S ? GO:0001508 ... P70673 35964676
    43 7tys:C (3.41) BS02 P5S ? GO:0001508 ... P70673 35964676
    44 7tys:C (3.41) BS03 P5S ? GO:0001508 ... P70673 35964676
    45 7tys:D (3.41) BS02 P5S ? GO:0001508 ... P70673 35964676
    46 7tys:D (3.41) BS04 P5S ? GO:0001508 ... P70673 35964676
    47 7tys:E (3.41) BS01 P5S ? GO:0005267 ... Q09427 35964676
    48 7tys:E (3.41) BS08 P5S ? GO:0005267 ... Q09427 35964676
    49 7tyt:B (3.6) BS02 P5S ? GO:0001508 ... P70673 35964676
    50 7tyt:E (3.6) BS03 P5S ? GO:0005267 ... Q09427 35964676
    51 7u1q:A (3.9) BS02 P5S ? GO:0001508 ... P70673 35964676
    52 7u1q:A (3.9) BS04 P5S ? GO:0001508 ... P70673 35964676
    53 7u1q:B (3.9) BS02 P5S ? GO:0001508 ... P70673 35964676
    54 7u1q:B (3.9) BS04 P5S ? GO:0001508 ... P70673 35964676
    55 7u1q:C (3.9) BS02 P5S ? GO:0001508 ... P70673 35964676
    56 7u1q:D (3.9) BS02 P5S ? GO:0001508 ... P70673 35964676
    57 7u1q:E (3.9) BS01 P5S ? GO:0005267 ... Q09427 35964676
    58 7u1s:A (3.8) BS02 P5S ? GO:0001508 ... P70673 35964676
    59 7u1s:A (3.8) BS03 P5S ? GO:0001508 ... P70673 35964676
    60 7u1s:A (3.8) BS04 P5S ? GO:0001508 ... P70673 35964676
    61 7u1s:B (3.8) BS02 P5S ? GO:0001508 ... P70673 35964676
    62 7u1s:C (3.8) BS02 P5S ? GO:0001508 ... P70673 35964676
    63 7u1s:C (3.8) BS04 P5S ? GO:0001508 ... P70673 35964676
    64 7u1s:D (3.8) BS02 P5S ? GO:0001508 ... P70673 35964676
    65 7u1s:D (3.8) BS04 P5S ? GO:0001508 ... P70673 35964676
    66 7u1s:E (3.8) BS01 P5S ? GO:0005267 ... Q09427 35964676
    67 7u1s:E (3.8) BS03 P5S ? GO:0005267 ... Q09427 35964676
    68 7u24:A (3.58) BS02 P5S ? GO:0001508 ... P70673 35964676
    69 7u24:A (3.58) BS04 P5S ? GO:0001508 ... P70673 35964676
    70 7u24:B (3.58) BS02 P5S ? GO:0001508 ... P70673 35964676
    71 7u24:B (3.58) BS03 P5S ? GO:0001508 ... P70673 35964676
    72 7u24:B (3.58) BS04 P5S ? GO:0001508 ... P70673 35964676
    73 7u24:C (3.58) BS02 P5S ? GO:0001508 ... P70673 35964676
    74 7u24:C (3.58) BS03 P5S ? GO:0001508 ... P70673 35964676
    75 7u24:C (3.58) BS04 P5S ? GO:0001508 ... P70673 35964676
    76 7u24:D (3.58) BS01 P5S ? GO:0001508 ... P70673 35964676
    77 7u24:D (3.58) BS02 P5S ? GO:0001508 ... P70673 35964676
    78 7u24:D (3.58) BS04 P5S ? GO:0001508 ... P70673 35964676
    79 7u24:D (3.58) BS05 P5S ? GO:0001508 ... P70673 35964676
    80 7u24:E (3.58) BS01 P5S ? GO:0005267 ... Q09427 35964676
    81 7u24:E (3.58) BS04 P5S ? GO:0005267 ... Q09427 35964676
    82 7u2x:E (4.1) BS01 P5S ? GO:0005267 ... Q09427 35964676
    83 7vgj:A (3.98) BS01 P5S 7.6.2.1 GO:0000166 ... O43520 35349344
    84 7w9k:A (2.2) BS01 P5S ? GO:0001518 ... Q15858 35476982
    85 7w9k:A (2.2) BS12 P5S ? GO:0001518 ... Q15858 35476982
    86 7w9k:A (2.2) BS19 P5S ? GO:0001518 ... Q15858 35476982
    87 7w9l:A (3.5) BS01 P5S ? GO:0001518 ... Q15858 35476982
    88 7w9l:A (3.5) BS08 P5S ? GO:0001518 ... Q15858 35476982
    89 7w9m:A (3.0) BS02 P5S ? GO:0001518 ... Q15858 35476982
    90 7w9p:A (2.9) BS02 P5S ? GO:0001518 ... Q15858 35476982
    91 7w9p:A (2.9) BS09 P5S ? GO:0001518 ... Q15858 35476982
    92 7w9p:A (2.9) BS16 P5S ? GO:0001518 ... Q15858 35476982
    93 7w9t:A (3.0) BS02 P5S ? GO:0001518 ... Q15858 35476982
    94 7w9t:A (3.0) BS11 P5S ? GO:0001518 ... Q15858 35476982
    95 7we4:A (2.7) BS09 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    96 7we4:A (2.7) BS10 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    97 7we4:A (2.7) BS11 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    98 7wel:A (3.2) BS10 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    99 7wel:A (3.2) BS11 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    100 7wfr:A (3.0) BS11 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    101 7wfw:A (3.1) BS09 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    102 7wfw:A (3.1) BS10 P5S ? GO:0001518 ... Q9Y5Y9 35858452
    103 7wld:K (2.53) BS02 P5S 3.-.-.- GO:0003923 ... Q92643 35551457
    104 7wlt:A (3.46) BS06 P5S ? GO:0005261 ... E2JF22 35388220
    105 7wlt:C (3.46) BS08 P5S ? GO:0005261 ... E2JF22 35388220
    106 7wlt:E (3.46) BS10 P5S ? GO:0005261 ... E2JF22 35388220
    107 7xve:A (2.7) BS18 P5S ? GO:0001518 ... Q15858 35878056
    108 7xzh:A (2.78) BS01 P5S ? GO:0001678 ... Q8IWT6 N/A
    109 7xzh:A (2.78) BS04 P5S ? GO:0001678 ... Q8IWT6 N/A
    110 7xzh:B (2.78) BS01 P5S ? GO:0001678 ... Q8IWT6 N/A
    111 7xzh:B (2.78) BS04 P5S ? GO:0001678 ... Q8IWT6 N/A
    112 7xzh:C (2.78) BS01 P5S ? GO:0001678 ... Q8IWT6 N/A
    113 7xzh:C (2.78) BS03 P5S ? GO:0001678 ... Q8IWT6 N/A
    114 7xzh:D (2.78) BS01 P5S ? GO:0001678 ... Q8IWT6 N/A
    115 7xzh:D (2.78) BS02 P5S ? GO:0001678 ... Q8IWT6 N/A
    116 7xzh:E (2.78) BS01 P5S ? GO:0001678 ... Q8IWT6 N/A
    117 7xzh:E (2.78) BS02 P5S ? GO:0001678 ... Q8IWT6 N/A
    118 7xzh:F (2.78) BS01 P5S ? GO:0001678 ... Q8IWT6 N/A
    119 7xzh:F (2.78) BS02 P5S ? GO:0001678 ... Q8IWT6 N/A
    120 8fhd:A (3.1) BS07 P5S ? GO:0001508 ... Q9UQD0 36696443
    121 8fhd:A (3.1) BS11 P5S ? GO:0001508 ... Q9UQD0 36696443
    122 8g1a:A (2.8) BS03 P5S ? GO:0001518 ... Q15858 37330538
    123 8g1a:A (2.8) BS11 P5S ? GO:0001518 ... Q15858 37330538
    124 8gym:M2 (2.96) BS01 P5S ? GO:0005310 ... Q23M99 37248254
    125 8gym:m2 (2.96) BS01 P5S ? GO:0005310 ... Q23M99 37248254
    126 8i5b:A (2.7) BS01 P5S ? GO:0001518 ... Q15858 37270609
    127 8i5x:A (2.9) BS01 P5S ? GO:0001518 ... Q15858 37270609
    128 8i5y:A (2.6) BS01 P5S ? GO:0001518 ... Q15858 37270609
    129 8qbd:A (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    130 8qbd:B (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    131 8qbd:C (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    132 8qbd:D (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    133 8qbd:E (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    134 8qbd:F (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    135 8qbd:G (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    136 8qbd:H (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    137 8qbd:I (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    138 8qbd:J (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    139 8qbd:K (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    140 8qbd:L (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    141 8qbd:M (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    142 8qbd:N (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    143 8qby:H (2.3) BS01 P5S N/A N/A A1B487 N/A
    144 8qby:I (2.3) BS03 P5S N/A N/A A1B486 N/A
    145 8qby:L (2.3) BS01 P5S N/A N/A A1B481 N/A
    146 8qby:q (2.3) BS01 P5S N/A N/A A1B1H8 N/A
    147 8qc1:L (2.5) BS01 P5S N/A N/A A1B481 N/A
    148 8s9b:A (2.9) BS03 P5S ? GO:0001518 ... Q15858 37270609
    149 8s9b:A (2.9) BS09 P5S ? GO:0001518 ... Q15858 37270609
    150 8s9c:A (3.2) BS02 P5S ? GO:0001518 ... Q15858 37270609
    151 8s9c:A (3.2) BS08 P5S ? GO:0001518 ... Q15858 37270609
    152 8s9c:A (3.2) BS15 P5S ? GO:0001518 ... Q15858 37270609
    153 8thg:A (2.9) BS06 P5S ? GO:0001518 ... Q15858 37782796
    154 8thh:A (2.7) BS08 P5S ? GO:0001518 ... Q15858 37782796
    155 8ti1:E (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    156 8ti1:E (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    157 8ti1:F (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    158 8ti1:F (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    159 8ti1:G (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    160 8ti1:G (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    161 8ti1:H (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    162 8ti1:H (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    163 8ti2:E (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    164 8ti2:E (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    165 8ti2:F (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    166 8ti2:F (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    167 8ti2:G (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    168 8ti2:G (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    169 8ti2:H (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    170 8ti2:H (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    171 8xmm:A (2.89) BS09 P5S ? GO:0001518 ... Q15858 38381792
    172 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    173 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    174 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    175 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    176 9b4e:A (2.7) BS01 P5S N/A N/A P48651 39208797
    177 9b4e:A (2.7) BS02 P5S N/A N/A P48651 39208797
    178 9b4e:B (2.7) BS03 P5S N/A N/A P48651 39208797
    179 9b4e:B (2.7) BS04 P5S N/A N/A P48651 39208797
    180 9b4g:A (2.87) BS01 P5S N/A N/A P48651 39208797
    181 9b4g:A (2.87) BS02 P5S N/A N/A P48651 39208797
    182 9b4g:B (2.87) BS03 P5S N/A N/A P48651 39208797
    183 9b4g:B (2.87) BS04 P5S N/A N/A P48651 39208797
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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