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BioLiP
Download all results in tab-seperated text for 78 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6u88:A (3.2) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    2 6u88:A (3.2) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    3 6u88:B (3.2) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    4 6u88:B (3.2) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    5 6u88:C (3.2) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    6 6u88:C (3.2) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    7 6u88:D (3.2) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    8 6u88:D (3.2) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    9 6u8a:A (3.4) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    10 6u8a:A (3.4) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    11 6u8a:B (3.4) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    12 6u8a:B (3.4) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    13 6u8a:C (3.4) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    14 6u8a:C (3.4) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    15 6u8a:D (3.4) BS01 P0T ? GO:0005216 ... Q9WUD2 31566564
    16 6u8a:D (3.4) BS02 P0T ? GO:0005216 ... Q9WUD2 31566564
    17 7t37:A (3.7) BS01 P0T ? GO:0005216 ... Q9WUD2 35484159
    18 7t37:A (3.7) BS04 P0T ? GO:0005216 ... Q9WUD2 35484159
    19 7t37:B (3.7) BS01 P0T ? GO:0005216 ... Q9WUD2 35484159
    20 7t37:B (3.7) BS03 P0T ? GO:0005216 ... Q9WUD2 35484159
    21 7t37:C (3.7) BS01 P0T ? GO:0005216 ... Q9WUD2 35484159
    22 7t37:C (3.7) BS03 P0T ? GO:0005216 ... Q9WUD2 35484159
    23 7t37:D (3.7) BS01 P0T ? GO:0005216 ... Q9WUD2 35484159
    24 7t37:D (3.7) BS04 P0T ? GO:0005216 ... Q9WUD2 35484159
    25 7te8:A (1.998) BS01 P0T N/A N/A N/A 35145136
    26 7te8:B (1.998) BS01 P0T N/A N/A N/A 35145136
    27 7te8:C (1.998) BS01 P0T N/A N/A N/A 35145136
    28 7te8:D (1.998) BS01 P0T N/A N/A N/A 35145136
    29 8g1a:A (2.8) BS01 P0T ? GO:0001518 ... Q15858 37330538
    30 8g1a:A (2.8) BS02 P0T ? GO:0001518 ... Q15858 37330538
    31 8j00:A (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    32 8j00:A (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    33 8j00:A (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    34 8j00:B (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    35 8j00:B (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    36 8j00:B (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    37 8j00:C (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    38 8j00:C (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    39 8j00:C (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    40 8j00:D (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    41 8j00:D (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    42 8j00:D (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    43 8j01:A (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    44 8j01:A (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    45 8j01:B (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    46 8j01:D (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    47 8j01:G (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    48 8j01:G (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    49 8j02:A (3.5) BS02 P0T ? GO:0005216 ... O43526 37857637
    50 8j02:B (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    51 8j02:D (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    52 8j02:G (3.5) BS01 P0T ? GO:0005216 ... O43526 37857637
    53 8j03:A (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    54 8j03:A (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    55 8j03:D (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    56 8j03:D (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    57 8j03:G (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    58 8j03:G (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    59 8j03:I (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    60 8j03:I (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    61 8slx:A (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    62 8slx:A (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    63 8slx:B (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    64 8slx:C (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    65 8slx:D (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    66 8slx:D (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    67 8sly:A (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    68 8sly:A (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    69 8sly:A (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    70 8sly:B (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    71 8sly:B (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    72 8sly:B (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    73 8sly:C (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    74 8sly:C (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    75 8sly:C (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    76 8sly:D (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    77 8sly:D (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    78 8sly:D (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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