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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 159 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a9x:A (1.8) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    2 1a9x:C (1.8) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    3 1a9x:E (1.8) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    4 1a9x:G (1.8) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 9636022
    5 1bxr:A (2.1) BS06 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10029528
    6 1bxr:C (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10029528
    7 1bxr:E (2.1) BS06 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10029528
    8 1bxr:G (2.1) BS06 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10029528
    9 1c30:A (2.0) BS05 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    10 1c30:C (2.0) BS01 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    11 1c30:E (2.0) BS01 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    12 1c30:G (2.0) BS01 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    13 1c3o:A (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    14 1c3o:C (2.1) BS05 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    15 1c3o:E (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    16 1c3o:G (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    17 1ce8:A (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    18 1ce8:A (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    19 1ce8:B (2.1) BS01 ORN 6.3.5.5 GO:0004088 ... P0A6F1 10428826
    20 1ce8:C (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    21 1ce8:C (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    22 1ce8:D (2.1) BS01 ORN 6.3.5.5 GO:0004088 ... P0A6F1 10428826
    23 1ce8:E (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    24 1ce8:E (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    25 1ce8:F (2.1) BS01 ORN 6.3.5.5 GO:0004088 ... P0A6F1 10428826
    26 1ce8:G (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    27 1ce8:G (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    28 1cs0:A (2.0) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    29 1cs0:C (2.0) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    30 1cs0:E (2.0) BS08 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    31 1cs0:G (2.0) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    32 1hqg:A (2.0) BS03 ORN 3.5.3.1 GO:0000050 ... P07824 11258880 PDBbind: -logKd/Ki=3.00, Ki=1.0mM
    33 1hqg:B (2.0) BS03 ORN 3.5.3.1 GO:0000050 ... P07824 11258880
    34 1hqg:C (2.0) BS03 ORN 3.5.3.1 GO:0000050 ... P07824 11258880
    35 1jdb:B (2.1) BS10 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    36 1jdb:E (2.1) BS11 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    37 1jdb:H (2.1) BS11 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    38 1jdb:K (2.1) BS10 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    39 1kee:A (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    40 1kee:C (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    41 1kee:E (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    42 1kee:G (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    43 1lah:E (2.06) BS01 ORN ? GO:0006865 ... P02911 7929349 MOAD: Kd=30nM
    PDBbind: -logKd/Ki=7.52, Kd=30nM
    44 1m6v:A (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 12130656
    45 1m6v:C (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 12130656
    46 1m6v:E (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 12130656
    47 1m6v:G (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 12130656
    48 1t36:A (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    49 1t36:C (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    50 1t36:E (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    51 1t36:G (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    52 1x7d:A (1.6) BS02 ORN 4.3.1.12 GO:0000166 ... Q88H32 15518536
    53 1x7d:B (1.6) BS01 ORN 4.3.1.12 GO:0000166 ... Q88H32 15518536
    54 3gmz:A (1.43) BS03 ORN 3.5.3.1 GO:0000050 ... P05089 21728378
    55 3gmz:B (1.43) BS03 ORN 3.5.3.1 GO:0000050 ... P05089 21728378
    56 3it6:A (2.4) BS01 ORN 2.3.1.1
    2.3.1.35    		 GO:0004358 ... P9WPZ3 20184895
    57 3it6:B (2.4) BS01 ORN 2.3.1.1
    2.3.1.35    		 GO:0004358 ... P9WPZ3 20184895
    58 3it6:C (2.4) BS01 ORN 2.3.1.1
    2.3.1.35    		 GO:0004358 ... P9WPZ3 20184895
    59 3it6:D (2.4) BS01 ORN 2.3.1.1
    2.3.1.35    		 GO:0004358 ... P9WPZ3 20184895
    60 3jdw:A (2.4) BS01 ORN 2.1.4.1 GO:0005515 ... P50440 9218780 MOAD: Ki=253uM
    PDBbind: -logKd/Ki=3.60, Ki=253uM
    61 3s61:A (3.03) BS02 ORN 1.14.13.195 GO:0002049 ... Q51548 21757711
    62 3s61:B (3.03) BS02 ORN 1.14.13.195 GO:0002049 ... Q51548 21757711
    63 3thj:A (1.5) BS03 ORN 3.5.3.1 GO:0000050 ... P05089 21870783
    64 3thj:A (1.5) BS04 ORN 3.5.3.1 GO:0000050 ... P05089 21870783
    65 3thj:B (1.5) BS03 ORN 3.5.3.1 GO:0000050 ... P05089 21870783
    66 3vvd:A (2.05) BS01 ORN ? GO:0015276 ... Q72JG5 23794618
    67 3vvd:B (2.05) BS01 ORN ? GO:0015276 ... Q72JG5 23794618
    68 4b63:A (1.9) BS03 ORN 1.14.13.196 GO:0000166 ... E9QYP0 22928747
    69 4b67:A (2.75) BS03 ORN 1.14.13.196 GO:0000166 ... E9QYP0 22928747
    70 4b67:A (2.75) BS04 ORN 1.14.13.196 GO:0000166 ... E9QYP0 22928747
    71 4b67:A (2.75) BS05 ORN 1.14.13.196 GO:0000166 ... E9QYP0 22928747
    72 4b69:A (2.3) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 22928747
    73 4cev:A (2.7) BS03 ORN 3.5.3.1 GO:0000050 ... P53608 10196128
    74 4cev:B (2.7) BS01 ORN 3.5.3.1 GO:0000050 ... P53608 10196128
    75 4cev:C (2.7) BS01 ORN 3.5.3.1 GO:0000050 ... P53608 10196128
    76 4cev:D (2.7) BS01 ORN 3.5.3.1 GO:0000050 ... P53608 10196128
    77 4cev:E (2.7) BS01 ORN 3.5.3.1 GO:0000050 ... P53608 10196128
    78 4cev:F (2.7) BS01 ORN 3.5.3.1 GO:0000050 ... P53608 10196128
    79 4gw2:A (2.157) BS02 ORN 2.7.3.3 GO:0003824 ... P51541 22995310
    80 4iu5:A (1.95) BS03 ORN 3.5.3.1 GO:0000050 ... Q6TUJ5 23583962
    81 4nzh:A (2.0) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 N/A
    82 4q42:A (2.051) BS03 ORN 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    83 4q42:B (2.051) BS03 ORN 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    84 4q42:C (2.051) BS03 ORN 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    85 4q42:D (2.051) BS03 ORN 3.5.3.1 GO:0000050 ... Q6WVP6 25007099
    86 4tlx:A (2.23) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    87 4tlx:B (2.23) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    88 4tlx:C (2.23) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    89 4tlx:D (2.23) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    90 4tlz:A (2.411) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    91 4tlz:B (2.411) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    92 4tlz:C (2.411) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    93 4tlz:D (2.411) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    94 4tm0:A (2.74) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    95 4tm0:B (2.74) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    96 4tm0:C (2.74) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    97 4tm0:D (2.74) BS03 ORN 1.14.13.59 GO:0000166 ... A8CF85 25184411
    98 5cku:A (2.1) BS03 ORN 1.14.13.196 GO:0000166 ... E9QYP0 26375201
    99 5yb7:A (2.0) BS02 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    100 5yb7:A (2.0) BS03 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    101 5yb7:A (2.0) BS04 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    102 5yb7:B (2.0) BS02 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    103 5yb7:B (2.0) BS03 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    104 5yb7:B (2.0) BS04 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    105 5yb7:C (2.0) BS01 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    106 5yb7:C (2.0) BS03 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    107 5yb7:C (2.0) BS04 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    108 5yb7:D (2.0) BS02 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    109 5yb7:D (2.0) BS03 ORN 1.13.12.3 GO:0000166 ... W6JQJ6 29511608
    110 5zeh:A (2.36) BS01 ORN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    111 5zeh:B (2.36) BS01 ORN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    112 6jv0:A (1.14) BS01 ORN ? N/A P74535 31914412
    113 6lrg:A (2.41218) BS02 ORN ? GO:0000166 ... Q8YMD9 32198136
    114 6lrg:B (2.41218) BS01 ORN ? GO:0000166 ... Q8YMD9 32198136
    115 6tbv:SPE1 (2.7) BS02 ORN ? GO:0006417 ... P0DTV7 32094585
    116 6tc3:SPE1 (2.7) BS02 ORN ? GO:0006417 ... P0DTV7 32094585
    117 6vst:A (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    118 6vst:B (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    119 6vst:E (2.12) BS01 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    120 6vst:F (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    121 6vst:H (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    122 6vst:I (2.12) BS01 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    123 6vst:J (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    124 6vst:L (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    125 6vsu:A (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    126 6vsu:C (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    127 6vsu:E (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    128 6vsu:F (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    129 6vsu:I (2.25) BS01 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    130 6vsu:K (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    131 6vsu:P (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    132 6vsu:S (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    133 6vsu:U (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    134 6vsu:V (2.25) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... P46637 32754173
    135 6x0j:A (2.335) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    136 6x0j:B (2.335) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    137 6x0j:C (2.335) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    138 6x0j:D (2.335) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    139 6x0k:A (2.231) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    140 6x0k:B (2.231) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    141 6x0k:D (2.231) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    142 6x0k:E (2.231) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    143 6x0k:G (2.231) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    144 6x0k:H (2.231) BS02 ORN 1.14.13.196 GO:0000166 ... E9QYP0 32723870
    145 7euk:B (1.4) BS03 ORN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    146 7u6h:A (2.0) BS01 ORN ? N/A A0A0F4XRB2 36913566
    147 7u6h:B (2.0) BS01 ORN ? N/A A0A0F4XRB2 36913566
    148 7u6h:C (2.0) BS01 ORN ? N/A A0A0F4XRB2 36913566
    149 7u6h:D (2.0) BS01 ORN ? N/A A0A0F4XRB2 36913566
    150 7vnt:A (1.92) BS02 ORN 2.6.1.13 GO:0008483 ... O50131 35337912
    151 7vnt:B (1.92) BS01 ORN 2.6.1.13 GO:0008483 ... O50131 35337912
    152 8g96:A (2.3) BS01 ORN ? N/A A0A5K6CNB8 37752201
    153 8g96:B (2.3) BS01 ORN ? N/A A0A5K6CNB8 37752201
    154 8pha:A (2.02) BS01 ORN ? GO:0008168 ... A0A067NAT9 38462720
    155 8pha:B (2.02) BS01 ORN ? GO:0008168 ... A0A067NAT9 38462720
    156 8qeu:A (1.5) BS01 ORN 2.1.3.3 GO:0004585 ... O50039 38179474
    157 8qeu:B (1.5) BS01 ORN 2.1.3.3 GO:0004585 ... O50039 38179474
    158 8qeu:C (1.5) BS01 ORN 2.1.3.3 GO:0004585 ... O50039 38179474
    159 8qeu:C (1.5) BS02 ORN 2.1.3.3 GO:0004585 ... O50039 38179474
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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