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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2uv0:E (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    2 2uv0:F (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    3 2uv0:G (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    4 2uv0:H (1.8) BS01 OHN ? N/A P25084 17363368 BindingDB: EC50=139nM
    5 3ix3:A (1.4) BS01 OHN ? N/A P25084 N/A BindingDB: EC50=139nM
    6 3ix3:B (1.4) BS01 OHN ? N/A P25084 N/A BindingDB: EC50=139nM
    7 3szt:A (2.55) BS01 OHN ? GO:0003677 ... Q9RMS5 21911405 BindingDB: EC50=15nM
    8 3szt:B (2.55) BS01 OHN ? GO:0003677 ... Q9RMS5 21911405 BindingDB: EC50=15nM
    9 4ng2:A (2.413) BS01 OHN ? N/A P25084 24319092 BindingDB: EC50=139nM
    10 4ng2:B (2.413) BS01 OHN ? N/A P25084 24319092 BindingDB: EC50=139nM
    11 4ng2:C (2.413) BS01 OHN ? N/A P25084 24319092 BindingDB: EC50=139nM
    12 4ng2:D (2.413) BS01 OHN ? N/A P25084 24319092 BindingDB: EC50=139nM
    13 6n9r:A (1.75) BS03 OHN 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    14 6n9r:P (1.75) BS03 OHN 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    15 6n9r:X (1.75) BS03 OHN 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    16 6v7w:B (3.0) BS01 OHN ? GO:0000976 ... P25084 33412111 BindingDB: EC50=139nM
    17 6v7w:E (3.0) BS01 OHN ? GO:0000976 ... P25084 33412111 BindingDB: EC50=139nM
    18 6v7x:B (2.9) BS01 OHN ? GO:0000976 ... P25084 33412111 BindingDB: EC50=139nM
    19 8ey1:D (3.2) BS01 OHN 3.5.1.99 GO:0000325 ... Q7XJJ7 N/A
    20 8ey1:F (3.2) BS01 OHN 3.5.1.99 GO:0000325 ... Q7XJJ7 N/A
    21 8ey1:H (3.2) BS01 OHN 3.5.1.99 GO:0000325 ... Q7XJJ7 N/A
    22 8ey1:J (3.2) BS01 OHN 3.5.1.99 GO:0000325 ... Q7XJJ7 N/A
    23 8ey1:L (3.2) BS01 OHN 3.5.1.99 GO:0000325 ... Q7XJJ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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