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BioLiP
Download all results in tab-seperated text for 119 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4df6:A (2.29) BS02 NXL 3.5.2.6 GO:0005576 ... P9WKD3 22587688
    2 4hbu:A (1.1) BS01 NXL 3.5.2.6 GO:0008800 ... Q9EXV5 23439634
    3 4hef:A (1.86) BS01 NXL 3.5.2.6 GO:0008800 ... P24735 23439634
    4 4ooy:A (1.1) BS01 NXL 3.5.2.6 GO:0008800 ... P24735 25022578
    5 4s2i:A (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... G3G192 27622530 PDBbind: -logKd/Ki=9.00, Kd=0.001uM
    6 4s2i:B (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... G3G192 27622530
    7 4s2j:A (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    8 4s2j:B (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    9 4s2j:C (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    10 4s2j:D (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    11 4s2k:A (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    12 4s2k:B (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    13 4s2k:C (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    14 4s2k:D (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    15 4s2n:A (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    16 4s2n:B (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    17 4s2n:C (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    18 4s2n:D (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    19 4s2o:A (1.7) BS01 NXL 3.5.2.6 GO:0008658 ... P14489 27622530
    20 4s2o:B (1.7) BS02 NXL 3.5.2.6 GO:0008658 ... P14489 27622530
    21 4wm9:A (2.4) BS01 NXL ? GO:0008658 ... Q8RLA6 25406838 PDBbind: -logKd/Ki=6.92, Kd=0.12uM
    22 4wmc:A (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838 PDBbind: -logKd/Ki=8.05, Kd=9nM
    23 4wmc:B (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    24 4wmc:C (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    25 4wmc:D (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    26 4wmc:E (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    27 4wmc:F (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    28 4wmc:G (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    29 4wmc:H (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838
    30 4zam:A (1.42) BS02 NXL 3.5.2.6 GO:0008800 ... P0AD64 26340563
    31 4zbe:A (1.8) BS01 NXL 3.5.2.6 GO:0008800 ... Q9F663 26340563
    32 5gwa:A (1.59) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0B6VPP7 28739781 PDBbind: -logKd/Ki=5.77, Ki=1.71uM
    33 5mnu:A (1.56) BS01 NXL 3.5.2.6 GO:0008658 ... P14489 28678295
    34 5mnu:B (1.56) BS01 NXL 3.5.2.6 GO:0008658 ... P14489 28678295
    35 5mox:A (1.41) BS01 NXL 3.5.2.6 GO:0008658 ... P14489 28678295
    36 5mox:B (1.41) BS01 NXL 3.5.2.6 GO:0008658 ... P14489 28678295
    37 5moz:A (1.34) BS01 NXL 3.5.2.6 GO:0008658 ... P14489 28678295
    38 5moz:B (1.34) BS05 NXL 3.5.2.6 GO:0008658 ... P14489 28678295
    39 5ne3:A (1.35) BS01 NXL 3.5.2.6 GO:0008800 ... B2FRP5 28876489 PDBbind: -logKd/Ki=7.84, IC50=14.36nM
    40 5ne3:B (1.35) BS01 NXL 3.5.2.6 GO:0008800 ... B2FRP5 28876489
    41 5za2:A (1.503) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L387 29439972 MOAD: Kd=1700nM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    42 5za2:B (1.503) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L387 29439972 MOAD: Kd=1700nM
    43 6bpf:A (1.318) BS01 NXL 3.5.2.6 GO:0008800 ... A0A077KT80 33431411
    44 6d3g:A (2.398) BS01 NXL 3.5.2.6 GO:0008800 ... A2RP81 31235626 PDBbind: -logKd/Ki=4.70, Ki=20uM
    45 6d3g:B (2.398) BS01 NXL 3.5.2.6 GO:0008800 ... A2RP81 31235626
    46 6d3g:C (2.398) BS01 NXL 3.5.2.6 GO:0008800 ... A2RP81 31235626
    47 6d3g:D (2.398) BS01 NXL 3.5.2.6 GO:0008800 ... A2RP81 31235626
    48 6fj1:A (2.69) BS01 NXL N/A GO:0016740 ... N/A 29601108
    49 6fj1:B (2.69) BS01 NXL N/A GO:0016740 ... N/A 29601108
    50 6fj1:C (2.69) BS01 NXL N/A GO:0016740 ... N/A 29601108
    51 6fm7:A (1.04) BS01 NXL 3.5.2.6 GO:0008800 ... A0A175VLQ4 29786960
    52 6g9f:A (2.35) BS01 NXL 3.4.16.4 GO:0008658 ... P0AD65 30995398 PDBbind: -logKd/Ki=6.23, IC50=0.59uM
    53 6gth:A (1.69) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0H3H219 30279492
    54 6h2h:A (1.62) BS01 NXL N/A GO:0008800 ... N/A 30632739
    55 6h2h:B (1.62) BS01 NXL N/A GO:0008800 ... N/A 30632739
    56 6lc8:A (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0A0Q7Z8 32284381
    57 6lc8:B (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0A0Q7Z8 32284381
    58 6mkq:A (1.9) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0U3IB62 30782990 PDBbind: -logKd/Ki=6.16, Kd=0.686uM
    59 6mz1:A (1.0) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L5C7 32123084
    60 6mz1:B (1.0) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L5C7 32123084
    61 6mz2:A (0.83) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L5C7 32123084
    62 6mz2:B (0.83) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L5C7 32123084
    63 6o9s:A (1.59) BS01 NXL ? GO:0008658 ... P0A0B1 32518158
    64 6o9w:A (1.95) BS01 NXL ? GO:0008658 ... P18357 32518158
    65 6o9w:A (1.95) BS02 NXL ? GO:0008658 ... P18357 32518158
    66 6o9w:B (1.95) BS01 NXL ? GO:0008658 ... P18357 32518158
    67 6o9w:B (1.95) BS02 NXL ? GO:0008658 ... P18357 32518158
    68 6q5b:A (2.22) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 30918055 PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    69 6q5b:B (2.22) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 30918055
    70 6q5b:C (2.22) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 30918055
    71 6q5b:D (2.22) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 30918055
    72 6tbw:A (1.51) BS01 NXL 3.5.2.6 GO:0008800 ... P00811 33199391
    73 6w2z:A (1.5) BS01 NXL 3.5.2.6 GO:0008800 ... P39824 N/A
    74 6w2z:B (1.5) BS01 NXL 3.5.2.6 GO:0008800 ... P39824 N/A
    75 6xj3:A (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    76 6xj3:B (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    77 6xj3:C (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    78 6xj3:D (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    79 7doo:A (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0H3KN52 28264560
    80 7doo:B (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0H3KN52 28264560
    81 7doo:C (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0H3KN52 28264560
    82 7kep:A (1.92) BS01 NXL N/A GO:0008658 ... N/A 33390002
    83 7keq:A (2.0) BS01 NXL N/A GO:0008658 ... N/A 33390002
    84 7ker:A (1.93) BS01 NXL N/A GO:0008658 ... N/A 33390002
    85 7kiv:A (2.389) BS01 NXL 3.4.16.4 GO:0000917 ... G3XD46 33593978
    86 7lnq:A (1.73) BS01 NXL N/A GO:0008658 ... N/A 33908775
    87 7lnr:A (1.83) BS01 NXL N/A GO:0008658 ... N/A 33908775
    88 7mea:A (1.73) BS01 NXL N/A GO:0008658 ... N/A 33908775
    89 7meb:A (1.8) BS01 NXL N/A GO:0008658 ... N/A 33908775
    90 7mec:A (1.73) BS01 NXL N/A GO:0008658 ... N/A 33908775
    91 7med:A (1.78) BS01 NXL N/A GO:0008658 ... N/A 33908775
    92 7mee:A (1.88) BS01 NXL N/A GO:0008658 ... N/A 33908775
    93 7mef:A (1.9) BS01 NXL N/A GO:0008658 ... N/A 33908775
    94 7meg:A (1.8) BS01 NXL N/A GO:0008658 ... N/A 33908775
    95 7meh:A (1.8) BS01 NXL N/A GO:0008658 ... N/A 33908775
    96 7o5n:AAA (1.6) BS03 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    97 7o5n:BBB (1.6) BS02 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    98 7o5n:CCC (1.6) BS02 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    99 7o5n:DDD (1.6) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    100 8b3m:A (1.97) BS01 NXL 3.5.2.6 GO:0008800 ... A0A0H3H219 37185266
    101 8de0:A (1.72) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    102 8de0:B (1.72) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    103 8de0:C (1.72) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    104 8de0:D (1.72) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    105 8de1:A (1.56) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    106 8de1:B (1.56) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    107 8de1:C (1.56) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    108 8de1:D (1.56) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    109 8de2:A (2.45) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    110 8de2:B (2.45) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    111 8de2:C (2.45) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    112 8de2:D (2.45) BS01 NXL 3.5.2.6 GO:0005515 ... P62593 36324090
    113 8ek9:A (1.4) BS01 NXL 3.5.2.6 GO:0008800 ... A0A1W0D7S2 37272821
    114 8ep6:A (1.5) BS01 NXL ? GO:0008658 ... A0A5C6M0R4 N/A
    115 8g2r:A (1.28) BS01 NXL 3.5.2.6 GO:0008800 ... Q9F663 37750722
    116 8tmr:A (1.37) BS01 NXL 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    117 8ttp:A (1.43) BS01 NXL 3.5.2.6 GO:0008800 ... A0A377KDY3 N/A
    118 8ttp:B (1.43) BS01 NXL 3.5.2.6 GO:0008800 ... A0A377KDY3 N/A
    119 9bzq:A (1.47) BS01 NXL 3.5.2.6 N/A A0A0H3LUA9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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