Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a9s:A (2.0) BS01 NOS 2.4.2.1 GO:0003824 ... P55859 9585525
    2 1kic:A (1.6) BS02 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    3 1kic:A (1.6) BS03 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    4 1kic:A (1.6) BS04 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    5 1kic:B (1.6) BS02 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    6 1pr0:A (2.2) BS02 NOS 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    7 1pr0:B (2.2) BS02 NOS 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    8 1pr0:C (2.2) BS02 NOS 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    9 1rct:E (2.8) BS01 NOS 2.4.2.1 GO:0000255 ... P00491 14706628
    10 1z38:A (2.5) BS01 NOS N/A GO:0003824 ... N/A 15817485
    11 2bsx:A (2.0) BS01 NOS 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 16131758
    12 2fqw:A (1.71) BS01 NOS ? GO:0005886 ... P29724 16418175 MOAD: Kd=210nM
    PDBbind: -logKd/Ki=6.68, Kd=210nM
    13 3b1p:A (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    14 3b1q:A (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    15 3b1q:B (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    16 3b1q:C (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    17 3b1q:D (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    18 3b1q:E (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    19 3b1q:F (1.7) BS01 NOS 2.7.1.143 GO:0000166 ... Q2SZE4 22101821
    20 3b9x:A (2.3) BS02 NOS 3.2.2.8 GO:0005509 ... P33022 18361502
    21 3b9x:B (2.3) BS02 NOS 3.2.2.8 GO:0005509 ... P33022 18361502
    22 3b9x:C (2.3) BS02 NOS 3.2.2.8 GO:0005509 ... P33022 18361502
    23 3b9x:D (2.3) BS02 NOS 3.2.2.8 GO:0005509 ... P33022 18361502
    24 3faz:A (1.9) BS01 NOS 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    25 3faz:B (1.9) BS01 NOS 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    26 3faz:C (1.9) BS01 NOS 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    27 3uax:A (1.2) BS01 NOS 2.4.2.1 GO:0003824 ... Q5EEL8 22349225
    28 3uaz:A (1.4) BS01 NOS 2.4.2.1 GO:0003824 ... Q5EEL8 22349225
    29 4f0s:A (1.851) BS01 NOS 3.5.4.28
    3.5.4.31    		 GO:0004000 ... Q7NZ90 N/A
    30 4f0s:A (1.851) BS02 NOS 3.5.4.28
    3.5.4.31    		 GO:0004000 ... Q7NZ90 N/A
    31 6flo:A (2.13869) BS01 NOS ? GO:0001932 ... Q9GU80 38517938
    32 6flo:A (2.13869) BS02 NOS ? GO:0001932 ... Q9GU80 38517938
    33 6flo:B (2.13869) BS01 NOS ? GO:0001932 ... Q9GU80 38517938
    34 6flo:B (2.13869) BS02 NOS ? GO:0001932 ... Q9GU80 38517938
    35 6h4g:A (2.14352) BS02 NOS ? GO:0001932 ... Q385V6 38517938
    36 6h4g:B (2.14352) BS02 NOS ? GO:0001932 ... Q385V6 38517938
    37 6hyi:B (1.39945) BS01 NOS ? GO:0001932 ... Q86RB0 38517938
    38 6hyi:B (1.39945) BS02 NOS ? GO:0001932 ... Q86RB0 38517938
    39 6ii7:A (2.48) BS01 NOS 3.5.4.31
    3.5.4.4    		 GO:0004000 ... Q8IJA9 31002765
    40 6t1b:A (1.2) BS01 NOS 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    41 7dcb:A (2.0) BS02 NOS 3.5.4.15 GO:0003824 ... Q94BU8 36499303
    42 7dcb:D (2.0) BS02 NOS 3.5.4.15 GO:0003824 ... Q94BU8 36499303
    43 7r37:A (2.28) BS02 NOS 3.13.2.1 GO:0004013 ... P50251 38548921
    44 7r37:B (2.28) BS02 NOS 3.13.2.1 GO:0004013 ... P50251 38548921
    45 7r3a:A (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    46 7r3a:B (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    47 7r3a:C (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    48 7r3a:D (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    49 7r3a:E (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    50 7r3a:F (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    51 7r3a:G (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    52 7r3a:H (2.53) BS01 NOS 3.13.1.9 GO:0004013 ... Q6LYR8 38548921
    53 7wn1:A (3.11) BS01 NOS ? GO:0005337 ... Q8IDM6 36977719
    54 8cod:A (2.48) BS02 NOS 3.13.2.1 GO:0004013 ... P50247 38548921
    55 8cod:B (2.48) BS02 NOS 3.13.2.1 GO:0004013 ... P50247 38548921
    56 8j6h:A (2.44074) BS01 NOS 3.1.3.99 GO:0000287 ... Q99312 38362806
    57 8j6h:B (2.44074) BS01 NOS 3.1.3.99 GO:0000287 ... Q99312 38362806
    58 8j6h:C (2.44074) BS01 NOS 3.1.3.99 GO:0000287 ... Q99312 38362806
    59 8j6h:D (2.44074) BS01 NOS 3.1.3.99 GO:0000287 ... Q99312 38362806
    60 8jb3:A (1.77382) BS01 NOS 3.1.3.99 GO:0000287 ... Q99312 38362806
    61 8qno:A (2.033) BS01 NOS N/A N/A P50251 38548921
    62 8qno:B (2.033) BS01 NOS N/A N/A P50251 38548921
    63 8sip:H (1.94) BS01 NOS N/A N/A N/A N/A
    64 8sip:L (1.94) BS01 NOS N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218