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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 166 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a4c:C (2.45) BS02 NO3 ? GO:0005507 ... P00280 9520385
    2 1a4c:D (2.45) BS02 NO3 ? GO:0005507 ... P00280 9520385
    3 1bg0:A (1.86) BS01 NO3 2.7.3.3 GO:0003824 ... P51541 9671698
    4 1bg0:A (1.86) BS02 NO3 2.7.3.3 GO:0003824 ... P51541 9671698
    5 1can:A (1.9) BS01 NO3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1336460 BindingDB: Ki=35000000nM
    6 1gy3:A (2.7) BS04 NO3 2.7.11.22 GO:0000082 ... P24941 12044161
    7 1hf4:A (1.45) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    8 1hf4:A (1.45) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    9 1hf4:A (1.45) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    10 1hf4:B (1.45) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11 1hf4:B (1.45) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    12 1hf4:B (1.45) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    13 1hf4:B (1.45) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    14 1l0p:A (2.1) BS02 NO3 3.2.1.1 GO:0003824 ... P29957 12021442
    15 1lks:A (1.1) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 9757091
    16 1lks:A (1.1) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 9757091
    17 1lks:A (1.1) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 9757091
    18 1lks:A (1.1) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 9757091
    19 1lks:A (1.1) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 9757091
    20 1lks:A (1.1) BS06 NO3 3.2.1.17 GO:0003796 ... P00698 9757091
    21 1s8j:A (2.3) BS01 NO3 ? GO:0005216 ... P02945 15109251
    22 1sd0:A (2.3) BS01 NO3 2.7.3.3 GO:0003824 ... P51541 15236576
    23 1u6r:B (1.65) BS01 NO3 2.7.3.2 GO:0003824 ... P00563 17327675
    24 1v7s:A (1.14) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    25 1v7s:A (1.14) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    26 1v7s:A (1.14) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    27 1v7s:A (1.14) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    28 1v7s:A (1.14) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    29 1v7t:A (1.13) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    30 1v7t:A (1.13) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    31 1v7t:B (1.13) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    32 1vrp:B (2.1) BS01 NO3 2.7.3.2 GO:0003824 ... P04414 12437342
    33 1ytn:A (2.4) BS01 NO3 3.1.3.48 GO:0004725 ... P15273 8702535
    34 2av6:A (2.01) BS06 NO3 2.4.1.1 GO:0004645 ... P00490 18164678
    35 2av6:B (2.01) BS06 NO3 2.4.1.1 GO:0004645 ... P00490 18164678
    36 2cj0:A (1.75) BS11 NO3 1.11.1.10 GO:0004601 ... P04963 16790441
    37 2d4i:A (1.16) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    38 2d4i:A (1.16) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    39 2d4i:B (1.16) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    40 2d4i:B (1.16) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    41 2d4i:B (1.16) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 16552138
    42 2g29:A (1.5) BS01 NO3 ? GO:0005886 ... P73452 16777960
    43 2h9c:A (2.35) BS01 NO3 4.2.99.21
    5.4.99.5    		 GO:0004106 ... Q51507 16914555
    44 2h9c:A (2.35) BS02 NO3 4.2.99.21
    5.4.99.5    		 GO:0004106 ... Q51507 16914555
    45 2h9c:A (2.35) BS03 NO3 4.2.99.21
    5.4.99.5    		 GO:0004106 ... Q51507 16914555
    46 2h9c:B (2.35) BS01 NO3 4.2.99.21
    5.4.99.5    		 GO:0004106 ... Q51507 16914555
    47 2jiq:A (2.44) BS04 NO3 1.9.6.1 GO:0005506 ... P81186 18327621
    48 2jiq:A (2.44) BS05 NO3 1.9.6.1 GO:0005506 ... P81186 18327621
    49 2lzt:A (1.97) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 2302327
    50 2lzt:A (1.97) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 2302327
    51 2lzt:A (1.97) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 2302327
    52 2pp9:A (1.8) BS03 NO3 1.7.2.1 GO:0005507 ... P38501 18358002
    53 2pp9:A (1.8) BS05 NO3 1.7.2.1 GO:0005507 ... P38501 18358002
    54 2pp9:B (1.8) BS01 NO3 1.7.2.1 GO:0005507 ... P38501 18358002
    55 2pp9:B (1.8) BS04 NO3 1.7.2.1 GO:0005507 ... P38501 18358002
    56 2pp9:C (1.8) BS01 NO3 1.7.2.1 GO:0005507 ... P38501 18358002
    57 2pp9:C (1.8) BS04 NO3 1.7.2.1 GO:0005507 ... P38501 18358002
    58 2vb1:A (0.65) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    59 2vb1:A (0.65) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    60 2vb1:A (0.65) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    61 2vb1:A (0.65) BS06 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    62 2vb1:A (0.65) BS07 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    63 2vb1:A (0.65) BS08 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    64 2vb1:A (0.65) BS09 NO3 3.2.1.17 GO:0003796 ... P00698 18084073
    65 2ybh:A (2.0) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 21525642
    66 2ybh:A (2.0) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 21525642
    67 2ybh:A (2.0) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 21525642
    68 2ybi:A (2.0) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 21525642
    69 2ybi:A (2.0) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 21525642
    70 3b6r:B (2.0) BS01 NO3 2.7.3.2 GO:0003824 ... P12277 18977227
    71 3bai:A (1.9) BS01 NO3 3.2.1.1 GO:0003824 ... P04746 18284212
    72 3baj:A (2.1) BS02 NO3 3.2.1.1 GO:0003824 ... P04746 18284212
    73 3bak:A (1.9) BS02 NO3 3.2.1.1 GO:0003824 ... P04746 18284212
    74 3bay:A (1.99) BS03 NO3 3.2.1.1 GO:0003824 ... P04746 18284212
    75 3ezh:A (1.7) BS01 NO3 2.7.13.3 N/A P0AFA2 19217390
    76 3ezh:B (1.7) BS01 NO3 2.7.13.3 N/A P0AFA2 19217390
    77 3lzt:A (0.925) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    78 3lzt:A (0.925) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    79 3lzt:A (0.925) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    80 3lzt:A (0.925) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    81 3lzt:A (0.925) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    82 3mm8:A (2.28) BS04 NO3 1.8.1.22 GO:0000103 ... Q59109 20822098
    83 3ru5:A (1.35) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 22042312
    84 3ru5:A (1.35) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 22042312
    85 3ru5:A (1.35) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 22042312
    86 3ru5:A (1.35) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 22042312
    87 4bjo:A (2.06) BS01 NO3 3.1.3.48 GO:0004725 ... P18031 24531490
    88 4bjo:B (2.06) BS01 NO3 3.1.3.48 GO:0004725 ... P18031 24531490
    89 4elw:A (2.551) BS01 NO3 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    90 4elw:B (2.551) BS01 NO3 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    91 4elw:C (2.551) BS01 NO3 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    92 4elw:D (2.551) BS01 NO3 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    93 4elw:E (2.551) BS01 NO3 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    94 4elw:F (2.551) BS01 NO3 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    95 4gvz:A (2.96) BS02 NO3 2.7.3.3 GO:0003824 ... P51541 22995310
    96 4gw0:A (2.448) BS03 NO3 2.7.3.3 GO:0003824 ... P51541 22995310
    97 4gw2:A (2.157) BS03 NO3 2.7.3.3 GO:0003824 ... P51541 22995310
    98 4iu8:A (3.11) BS01 NO3 ? GO:0005886 ... P37758 23523348
    99 4iuk:A (2.35) BS01 NO3 ? N/A B9DL91 24389349
    100 4iuk:B (2.35) BS01 NO3 ? N/A B9DL91 24389349
    101 4lzt:A (0.95) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    102 4lzt:A (0.95) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    103 4lzt:A (0.95) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    104 4lzt:A (0.95) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    105 4lzt:A (0.95) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    106 4lzt:A (0.95) BS06 NO3 3.2.1.17 GO:0003796 ... P00698 9761848
    107 4u4t:A (2.4) BS01 NO3 ? GO:0005452 ... P10903 25959928
    108 4u4w:A (2.4) BS01 NO3 ? GO:0005452 ... P10903 25959928
    109 4u4w:B (2.4) BS01 NO3 ? GO:0005452 ... P10903 25959928
    110 5a2o:A (3.71) BS01 NO3 ? GO:0005515 ... Q05085 24572366
    111 5iji:A (1.94) BS01 NO3 2.7.13.3 GO:0007165 ... P27896 28522691
    112 5jef:A (2.42) BS01 NO3 2.7.13.3 GO:0007165 ... P27896 28522691
    113 5jef:B (2.42) BS01 NO3 2.7.13.3 GO:0007165 ... P27896 28522691
    114 6ff5:A (1.74) BS02 NO3 ? GO:0005739 ... P62894 29516298
    115 6ff5:A (1.74) BS03 NO3 ? GO:0005739 ... P62894 29516298
    116 6gcv:A (1.3) BS01 NO3 ? N/A Q9I055 30782655
    117 6gcv:B (1.3) BS01 NO3 ? N/A Q9I055 30782655
    118 6gcv:C (1.3) BS01 NO3 ? N/A Q9I055 30782655
    119 6izj:A (2.1) BS01 NO3 ? N/A A0A0H3JU14 31970556
    120 7jmu:A (1.2) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    121 7jmu:A (1.2) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    122 7jmu:A (1.2) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    123 7jmu:A (1.2) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    124 7jmu:B (1.2) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    125 7jmu:B (1.2) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    126 7jmu:B (1.2) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    127 7jmu:B (1.2) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    128 7jmu:B (1.2) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    129 7jmu:B (1.2) BS06 NO3 3.2.1.17 GO:0003796 ... P00698 33109332
    130 7rxy:AAA (1.6) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    131 7rxy:AAA (1.6) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    132 7rxy:AAA (1.6) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    133 7rxy:AAA (1.6) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    134 7rxy:BBB (1.6) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    135 7rxy:BBB (1.6) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    136 7rxy:BBB (1.6) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    137 7rxy:BBB (1.6) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    138 7rxy:BBB (1.6) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    139 7ryd:AAA (1.18) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    140 7ryd:AAA (1.18) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    141 7ryd:AAA (1.18) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    142 7ryd:AAA (1.18) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    143 7ryd:BBB (1.18) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    144 7ryd:BBB (1.18) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    145 7ryd:BBB (1.18) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    146 7ryk:AAA (1.76) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    147 7ryk:AAA (1.76) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    148 7ryk:AAA (1.76) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    149 7ryk:BBB (1.76) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    150 7ryk:BBB (1.76) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    151 7ryk:BBB (1.76) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    152 7ryk:BBB (1.76) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    153 7ryk:BBB (1.76) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 37480654
    154 7w9z:A (1.65) BS02 NO3 N/A GO:0016491 ... N/A 35163804
    155 7w9z:A (1.65) BS03 NO3 N/A GO:0016491 ... N/A 35163804
    156 7w9z:B (1.65) BS02 NO3 N/A GO:0016491 ... N/A 35163804
    157 7w9z:B (1.65) BS03 NO3 N/A GO:0016491 ... N/A 35163804
    158 7xa9:A (2.84) BS01 NO3 ? GO:0005247 ... P92941 36581207
    159 7xa9:A (2.84) BS02 NO3 ? GO:0005247 ... P92941 36581207
    160 7xa9:A (2.84) BS03 NO3 ? GO:0005247 ... P92941 36581207
    161 7xa9:B (2.84) BS01 NO3 ? GO:0005247 ... P92941 36581207
    162 7xa9:B (2.84) BS02 NO3 ? GO:0005247 ... P92941 36581207
    163 7xa9:B (2.84) BS03 NO3 ? GO:0005247 ... P92941 36581207
    164 8gep:A (2.2) BS01 NO3 1.8.1.2 GO:0004783 ... P17846 9315849
    165 8wm8:A (3.54) BS01 NO3 ? GO:0005886 ... Q8YZ77 38457518
    166 8wm8:B (3.54) BS01 NO3 ? GO:0005886 ... Q8YZ77 38457518
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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