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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xcj:A (2.0) BS02 NMG 2.1.1.2 GO:0005634 ... P10868 15533043
    2 4v7n:AA (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    3 4v7n:AB (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    4 4v7n:AC (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    5 4v7n:AD (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    6 4v7n:AE (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    7 4v7n:AF (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    8 4v7n:AG (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    9 4v7n:AH (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    10 4v7n:AI (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    11 4v7n:AJ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    12 4v7n:AK (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    13 4v7n:AL (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    14 4v7n:AM (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    15 4v7n:AN (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    16 4v7n:AO (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    17 4v7n:AP (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    18 4v7n:AQ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    19 4v7n:AR (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    20 4v7n:BA (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    21 4v7n:BB (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    22 4v7n:BC (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    23 4v7n:BD (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    24 4v7n:BE (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    25 4v7n:BF (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    26 4v7n:BG (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    27 4v7n:BH (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    28 4v7n:BI (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    29 4v7n:BJ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    30 4v7n:BK (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    31 4v7n:BL (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    32 4v7n:BM (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    33 4v7n:BN (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    34 4v7n:BO (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    35 4v7n:BP (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    36 4v7n:BQ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    37 4v7n:BR (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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