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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gs5:A (1.5) BS01 NLG 2.7.2.8 GO:0003991 ... P0A6C8 12005432
    2 1gsj:A (1.85) BS01 NLG 2.7.2.8 GO:0003991 ... P0A6C8 12005432
    3 1oh9:A (1.91) BS02 NLG 2.7.2.8 GO:0003991 ... P0A6C8 12875848
    4 1oha:A (1.9) BS02 NLG 2.7.2.8 GO:0003991 ... P0A6C8 12875848
    5 2bty:A (2.75) BS02 NLG 2.7.2.8 GO:0003991 ... Q9X2A4 16376937
    6 2bty:B (2.75) BS02 NLG 2.7.2.8 GO:0003991 ... Q9X2A4 16376937
    7 2bty:C (2.75) BS02 NLG 2.7.2.8 GO:0003991 ... Q9X2A4 16376937
    8 2buf:A (2.95) BS01 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    9 2buf:B (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    10 2buf:D (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    11 2buf:E (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    12 2buf:F (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    13 2buf:G (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    14 2buf:H (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    15 2buf:I (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    16 2buf:K (2.95) BS01 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    17 2buf:L (2.95) BS02 NLG 2.7.2.8 GO:0003991 ... Q9HTN2 16376937
    18 2jj4:A (3.46) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    19 2jj4:B (3.46) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    20 2rd5:A (2.51) BS03 NLG 2.7.2.8 GO:0003991 ... Q9SCL7 17913711
    21 2rd5:B (2.51) BS03 NLG 2.7.2.8 GO:0003991 ... Q9SCL7 17913711
    22 2v5h:A (2.75) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    23 2v5h:B (2.75) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    24 2v5h:C (2.75) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    25 2v5h:D (2.75) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    26 2v5h:E (2.75) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    27 2v5h:F (2.75) BS01 NLG 2.7.2.8 GO:0003991 ... Q6V1L5 17959776
    28 3b8g:A (2.6) BS02 NLG 2.3.1.1 GO:0004042 ... Q5FAK7 18184660
    29 3l86:A (2.06) BS02 NLG 2.7.2.8 GO:0003991 ... Q8DV44 N/A
    30 3zzf:A (2.2) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931 MOAD: Ki=400mM
    PDBbind: -logKd/Ki=0.40, Ki=400mM
    31 3zzf:B (2.2) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931 MOAD: Ki=400mM
    32 3zzf:C (2.2) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931 MOAD: Ki=400mM
    33 3zzf:D (2.2) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931 MOAD: Ki=400mM
    34 3zzh:A (2.1) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931
    35 3zzh:B (2.1) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931
    36 3zzh:C (2.1) BS02 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931
    37 3zzh:D (2.1) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0005737 ... Q01217 22529931
    38 4ab7:D (3.25) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0003991 ... Q01217 22529931
    39 4ab7:H (3.25) BS01 NLG 1.2.1.38
    2.7.2.8    		 GO:0003991 ... Q01217 22529931
    40 4k30:A (2.103) BS01 NLG 2.3.1.1 GO:0016747 ... Q8N159 23894642
    41 4k30:B (2.103) BS01 NLG 2.3.1.1 GO:0016747 ... Q8N159 23894642
    42 4k30:X (2.103) BS01 NLG 2.3.1.1 GO:0016747 ... Q8N159 23894642
    43 4k30:Y (2.103) BS01 NLG 2.3.1.1 GO:0016747 ... Q8N159 23894642
    44 4nex:A (1.6955) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    45 4nex:B (1.6955) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    46 4nf1:A (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    47 4nf1:B (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    48 4nf1:C (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    49 4nf1:D (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    50 4nf1:E (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    51 4nf1:F (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    52 4nf1:G (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    53 4nf1:H (1.3986) BS01 NLG 2.7.2.8 GO:0016747 ... Q87EL2 25615976
    54 4usj:A (2.85) BS03 NLG 2.7.2.8 GO:0003991 ... Q9SCL7 25416954
    55 5dou:A (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    56 5dou:B (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    57 5dou:C (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    58 5dou:D (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    59 7nln:A (1.92) BS01 NLG 2.7.2.8 GO:0003991 ... P9WQ01 N/A
    60 7nln:B (1.92) BS01 NLG 2.7.2.8 GO:0003991 ... P9WQ01 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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