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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3nkm:A (2.002) BS05 NKP 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    2 3nkp:A (1.751) BS05 NKP 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    3 5dlw:A (1.8) BS06 NKP 3.1.4.39 GO:0001953 ... Q64610 27075612
    4 5m0m:A (2.1) BS07 NKP 3.1.4.39 GO:0001953 ... Q64610 28165241
    5 6z1j:H (2.1) BS01 NKP ? GO:0015979 ... P0C0Y7 33209319
    6 6z1j:M (2.1) BS09 NKP ? GO:0009772 ... P0C0Y9 33209319
    7 6z1j:M (2.1) BS10 NKP ? GO:0009772 ... P0C0Y9 33209319
    8 7bgi:3 (2.54) BS17 NKP ? GO:0009765 ... Q75VY9 N/A
    9 7blx:3 (3.15) BS17 NKP ? GO:0009765 ... Q75VY9 N/A
    10 7od5:H (2.1) BS01 NKP ? GO:0015979 ... Q3J170 35371503
    11 7od5:M (2.1) BS03 NKP ? GO:0009772 ... Q3J1A6 35371503
    12 7od5:M (2.1) BS04 NKP ? GO:0009772 ... Q3J1A6 35371503
    13 7p0q:H (1.73) BS01 NKP ? GO:0015979 ... P0C0Y7 N/A
    14 7p0q:M (1.73) BS03 NKP ? GO:0009772 ... P0C0Y9 N/A
    15 7p0q:M (1.73) BS04 NKP ? GO:0009772 ... P0C0Y9 N/A
    16 7p17:H (2.22) BS01 NKP ? GO:0015979 ... P0C0Y7 N/A
    17 7p17:M (2.22) BS04 NKP ? GO:0009772 ... P0C0Y9 N/A
    18 7p17:M (2.22) BS06 NKP ? GO:0009772 ... P0C0Y9 N/A
    19 7p2c:H (2.04) BS01 NKP ? GO:0015979 ... Q3J170 35371503
    20 7p2c:M (2.04) BS04 NKP ? GO:0009772 ... Q3J1A6 35371503
    21 7p2c:M (2.04) BS06 NKP ? GO:0009772 ... Q3J1A6 35371503
    22 7td0:R (2.83) BS01 NKP ? GO:0001965 ... Q92633 35136060
    23 7td1:R (3.08) BS01 NKP ? GO:0001965 ... Q92633 35136060
    24 7td2:R (3.11) BS01 NKP ? GO:0001965 ... Q92633 35136060
    25 7z8d:H (2.14) BS01 NKP ? GO:0015979 ... P0C0Y7 N/A
    26 7z8d:M (2.14) BS03 NKP ? GO:0009772 ... P0C0Y9 N/A
    27 7z8d:M (2.14) BS04 NKP ? GO:0009772 ... P0C0Y9 N/A
    28 8c3p:A (2.38) BS02 NKP 3.1.4.39 GO:0003676 ... Q13822 37976710
    29 8c3p:B (2.38) BS02 NKP 3.1.4.39 GO:0003676 ... Q13822 37976710
    30 8c88:H (2.75) BS01 NKP ? GO:0015979 ... Q3J170 36837657
    31 8c88:M (2.75) BS03 NKP ? GO:0009772 ... Q3J1A6 36837657
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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