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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3nkn:A (1.8) BS05 NKN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    2 3qcu:H (1.979) BS01 NKN ? N/A Q6N089 21392506
    3 3qcu:I (1.979) BS01 NKN ? N/A Q6N089 21392506
    4 3qcu:L (1.979) BS01 NKN ? GO:0002250 ... P01834 21392506
    5 3qcu:M (1.979) BS01 NKN ? GO:0002250 ... P01834 21392506
    6 3sao:A (1.8) BS01 NKN ? GO:0002062 ... P21760 22153502
    7 3sao:B (1.8) BS01 NKN ? GO:0002062 ... P21760 22153502
    8 4zg7:A (1.75) BS05 NKN 3.1.4.39 GO:0003676 ... Q13822 26371182
    9 8t0c:A (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    10 8t0c:B (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    11 8t0c:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    12 8t0c:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    13 8t0y:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    14 8t0y:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    15 8t10:A (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    16 8t10:B (3.7) BS02 NKN ? GO:0000122 ... O35433 38698206
    17 8t10:C (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    18 8t10:D (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    19 8t3l:B (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    20 8t3l:C (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    21 8t3m:B (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    22 8t3m:C (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    23 8t3m:C (3.5) BS02 NKN ? GO:0005216 ... O35433 38698206
    24 8t3m:D (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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