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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2opm:A (2.4) BS05 NI9 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 19309137
    2 3dyf:A (2.65) BS03 NI9 2.5.1.10 GO:0004161 ... Q86C09 19309137
    3 3dyf:B (2.65) BS03 NI9 2.5.1.10 GO:0004161 ... Q86C09 19309137
    4 3dyg:A (2.1) BS03 NI9 2.5.1.10 GO:0004161 ... Q86C09 19309137
    5 3dyg:B (2.1) BS03 NI9 2.5.1.10 GO:0004161 ... Q86C09 19309137
    6 3icn:A (2.4) BS01 NI9 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7 3id0:A (2.81) BS01 NI9 2.5.1.10 GO:0004161 ... Q8WS25 19876942
    8 4k10:A (2.3) BS02 NI9 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749 MOAD: Kd=119.5nM
    PDBbind: -logKd/Ki=6.92, Kd=119.5nM
    9 4k10:B (2.3) BS02 NI9 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749 MOAD: Kd=119.5nM
    PDBbind: -logKd/Ki=6.92, Kd=119.5nM
    10 4k10:C (2.3) BS02 NI9 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749 MOAD: Kd=119.5nM
    11 4k10:D (2.3) BS02 NI9 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749 MOAD: Kd=119.5nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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