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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 417 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a5n:C (2.4) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    2 1a5n:C (2.4) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    3 1a5o:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    4 1a5o:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9558361
    5 1cc1:L (2.15) BS02 NI 1.12.99.6 GO:0008901 ... P13065 10378275
    6 1ejr:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    7 1ejr:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    8 1ejs:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    9 1ejs:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    10 1ejt:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    11 1ejt:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    12 1eju:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    13 1eju:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    14 1ejv:C (2.4) BS01 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    15 1ejv:C (2.4) BS02 NI 3.5.1.5 GO:0005515 ... P18314 10913264
    16 1f5t:A (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    17 1f5t:A (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    18 1f5t:B (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    19 1f5t:B (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    20 1f5t:C (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    21 1f5t:C (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    22 1f5t:D (3.0) BS03 NI ? GO:0003677 ... P0DJL7 10956029
    23 1f5t:D (3.0) BS04 NI ? GO:0003677 ... P0DJL7 10956029
    24 1frv:B (2.85) BS01 NI 1.12.2.1 GO:0008901 ... P12944 7854413
    25 1frv:D (2.85) BS02 NI 1.12.2.1 GO:0008901 ... P12944 7854413
    26 1fwa:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    27 1fwa:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    28 1fwb:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    29 1fwb:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    30 1fwc:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    31 1fwc:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    32 1fwd:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    33 1fwd:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    34 1fwe:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    35 1fwe:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    36 1fwf:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    37 1fwf:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    38 1fwg:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    39 1fwg:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    40 1fwh:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    41 1fwh:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    42 1fwi:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8702515
    43 1fwj:C (2.2) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    44 1fwj:C (2.2) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    45 1iae:A (1.83) BS01 NI 3.4.24.21 GO:0004222 ... P07584 8006015
    46 1ie7:C (1.85) BS01 NI 3.5.1.5 GO:0005737 ... P41020 11713685
    47 1ie7:C (1.85) BS02 NI 3.5.1.5 GO:0005737 ... P41020 11713685
    48 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    49 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    50 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    51 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    52 1nzr:A (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    53 1nzr:B (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    54 1nzr:C (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    55 1nzr:D (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    56 1oej:A (1.81) BS01 NI ? GO:0005737 ... P76344 12909634
    57 1q0g:A (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    58 1q0g:B (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    59 1q0g:C (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    60 1q0g:D (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    61 1q0g:E (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    62 1q0g:F (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    63 1q0g:G (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    64 1q0g:H (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    65 1q0g:I (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    66 1q0g:J (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    67 1q0g:K (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    68 1q0g:L (1.6) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    69 1q0k:A (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    70 1q0k:B (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    71 1q0k:C (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    72 1q0k:D (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    73 1q0k:E (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    74 1q0k:F (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    75 1q0k:G (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    76 1q0k:H (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    77 1q0k:I (2.1) BS02 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    78 1q0k:J (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    79 1q0k:K (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    80 1q0k:L (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    81 1q0m:A (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    82 1q0m:B (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    83 1q0m:C (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    84 1q0m:D (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    85 1q0m:E (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    86 1q0m:F (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    87 1q3i:A (2.6) BS01 NI 7.2.2.13 GO:0000166 ... D2WKD8 14499619
    88 1q3i:A (2.6) BS02 NI 7.2.2.13 GO:0000166 ... D2WKD8 14499619
    89 1q3i:A (2.6) BS03 NI 7.2.2.13 GO:0000166 ... D2WKD8 14499619
    90 1q5y:A (1.4) BS01 NI ? N/A P0A6Z6 12970756
    91 1q5y:B (1.4) BS01 NI ? N/A P0A6Z6 12970756
    92 1q5y:C (1.4) BS01 NI ? N/A P0A6Z6 12970756
    93 1q5y:D (1.4) BS01 NI ? N/A P0A6Z6 12970756
    94 1ru3:A (2.2) BS01 NI 2.3.1.169 GO:0003824 ... P83789 14699043
    95 1rze:A (1.9) BS01 NI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15299481
    96 1scr:A (2.0) BS01 NI ? GO:0030246 ... P02866 15299372
    97 1t6u:A (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    98 1t6u:B (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    99 1t6u:C (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    100 1t6u:D (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    101 1t6u:E (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    102 1t6u:F (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    103 1t6u:G (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    104 1t6u:H (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    105 1t6u:I (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    106 1t6u:J (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    107 1t6u:K (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    108 1t6u:L (1.3) BS01 NI 1.15.1.1 GO:0004784 ... P80735 15209499
    109 1ubp:C (1.65) BS01 NI 3.5.1.5 GO:0005737 ... P41020 N/A
    110 1ubp:C (1.65) BS02 NI 3.5.1.5 GO:0005737 ... P41020 N/A
    111 1xm5:A (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    112 1xm5:B (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    113 1xm5:C (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    114 1xm5:D (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    115 260l:A (1.8) BS01 NI 3.2.1.17 GO:0003796 ... P00720 10835104
    116 2atf:A (1.75) BS01 NI 1.13.11.20 GO:0005506 ... P60334 16492780
    117 2bdg:A (1.95) BS01 NI 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    118 2bdg:B (1.95) BS01 NI 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    119 2bj1:A (3.0) BS01 NI ? GO:0003677 ... O58316 15826657
    120 2bj1:B (3.0) BS01 NI ? GO:0003677 ... O58316 15826657
    121 2bj7:A (2.1) BS01 NI ? GO:0003677 ... O58316 15826657
    122 2bj7:B (2.1) BS01 NI ? GO:0003677 ... O58316 15826657
    123 2bj8:A (2.1) BS01 NI ? GO:0003677 ... O58316 15826657
    124 2bj8:B (2.1) BS01 NI ? GO:0003677 ... O58316 15826657
    125 2bj8:B (2.1) BS02 NI ? GO:0003677 ... O58316 15826657
    126 2bj9:A (3.0) BS01 NI ? GO:0003677 ... O58316 15826657
    127 2bj9:B (3.0) BS01 NI ? GO:0003677 ... O58316 15826657
    128 2bj9:B (3.0) BS02 NI ? GO:0003677 ... O58316 15826657
    129 2c21:A (2.0) BS01 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    130 2c21:A (2.0) BS02 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    131 2c21:B (2.0) BS01 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    132 2c21:B (2.0) BS02 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    133 2c21:C (2.0) BS01 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    134 2c21:C (2.0) BS02 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    135 2c21:D (2.0) BS01 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    136 2c21:D (2.0) BS02 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    137 2c21:E (2.0) BS01 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    138 2c21:E (2.0) BS02 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    139 2c21:F (2.0) BS01 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    140 2c21:F (2.0) BS02 NI 4.4.1.5 GO:0004462 ... Q68RJ8 16430697
    141 2cad:A (2.3) BS01 NI ? GO:0000976 ... O25896 16872629
    142 2cad:B (2.3) BS01 NI ? GO:0000976 ... O25896 16872629
    143 2cad:B (2.3) BS02 NI ? GO:0000976 ... O25896 16872629
    144 2def:A (-1.00) BS01 NI 3.5.1.88 GO:0042586 ... P0A6K3 9665852
    145 2ggt:A (2.4) BS01 NI ? N/A O75880 16735468
    146 2ggt:B (2.4) BS01 NI ? N/A O75880 16735468
    147 2gqk:A (-1.00) BS01 NI ? N/A O75880 16735468
    148 2gql:A (-1.00) BS01 NI ? N/A O75880 16735468
    149 2hza:A (2.1) BS01 NI ? GO:0000976 ... P0A6Z6 16945905
    150 2hza:B (2.1) BS02 NI ? GO:0000976 ... P0A6Z6 16945905
    151 2hzv:A (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    152 2hzv:B (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    153 2hzv:C (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    154 2hzv:D (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    155 2hzv:E (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    156 2hzv:F (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    157 2hzv:G (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    158 2hzv:H (3.1) BS03 NI ? GO:0000976 ... P0A6Z6 16945905
    159 2kau:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 7754395
    160 2kau:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 7754395
    161 2kkd:A (-1.00) BS01 NI ? GO:0005506 ... P00269 19997764
    162 2noo:A (1.65) BS01 NI 3.6.3.24 GO:0005515 ... P33590 17242515
    163 2ubp:C (2.0) BS01 NI 3.5.1.5 GO:0005737 ... P41020 10368287
    164 2ubp:C (2.0) BS02 NI 3.5.1.5 GO:0005737 ... P41020 10368287
    165 2vtc:A (1.6) BS01 NI 3.2.1.4 N/A Q7Z9M7 18723026
    166 2vtc:B (1.6) BS01 NI 3.2.1.4 N/A Q7Z9M7 18723026
    167 2w3t:A (1.69) BS01 NI 3.5.1.88 GO:0005515 ... P0A6K3 20112455
    168 2w3u:A (1.96) BS01 NI 3.5.1.88 GO:0005515 ... P0A6K3 20112455
    169 2wvf:B (1.6) BS01 NI ? GO:0000976 ... O25896 20089510
    170 2y39:A (1.41) BS01 NI ? GO:0042597 ... P37975 21414325
    171 2y3y:A (2.39) BS01 NI ? N/A B5Z8Y5 21725560
    172 2y3y:B (2.39) BS01 NI ? N/A B5Z8Y5 21725560
    173 2y3y:C (2.39) BS01 NI ? N/A B5Z8Y5 21725560
    174 2y3y:D (2.39) BS01 NI ? N/A B5Z8Y5 21725560
    175 3eyy:A (2.4) BS01 NI ? GO:0000976 ... Q9K4F8 19336416
    176 3eyy:B (2.4) BS01 NI ? GO:0000976 ... Q9K4F8 19336416
    177 3fop:A (3.0) BS03 NI ? GO:0005506 ... P0ABE7 19527025
    178 3fop:B (3.0) BS03 NI ? GO:0005506 ... P0ABE7 19527025
    179 3g4x:A (2.01) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    180 3g4x:B (2.01) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    181 3g4x:C (2.01) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    182 3g4z:A (1.87) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    183 3g4z:B (1.87) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    184 3g4z:C (1.87) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    185 3g50:A (1.9) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    186 3g50:C (1.9) BS01 NI 1.15.1.1 GO:0004784 ... P80735 19183068
    187 3kbn:A (1.53) BS01 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    188 3kbn:A (1.53) BS02 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    189 3kbn:A (1.53) BS03 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    190 3kbv:A (1.8) BS01 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    191 3kbv:A (1.8) BS02 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    192 3kbw:A (1.6) BS01 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    193 3kco:A (1.53) BS01 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    194 3kco:A (1.53) BS02 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    195 3kco:A (1.53) BS03 NI 5.3.1.5 GO:0000287 ... P24300 20541506
    196 3la4:A (2.05) BS01 NI 3.5.1.5 GO:0009039 ... P07374 20471401
    197 3la4:A (2.05) BS02 NI 3.5.1.5 GO:0009039 ... P07374 20471401
    198 3lgh:A (2.37) BS01 NI ? GO:0000976 ... O25896 20863122
    199 3lgh:B (2.37) BS01 NI ? GO:0000976 ... O25896 20863122
    200 3lgh:C (2.37) BS01 NI ? GO:0000976 ... O25896 20863122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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