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BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c7s:A (1.8) BS01 NAG 3.2.1.52 GO:0000272 ... Q54468 10884356
    2 1c7s:A (1.8) BS02 NAG 3.2.1.52 GO:0000272 ... Q54468 10884356
    3 1c7t:A (1.9) BS01 NAG 3.2.1.52 GO:0000272 ... Q54468 10884356
    4 1c7t:A (1.9) BS02 NAG 3.2.1.52 GO:0000272 ... Q54468 10884356
    5 1fuj:A (2.2) BS01 NAG 3.4.21.76 GO:0004252 ... P24158 8757293
    6 1lsz:A (2.0) BS01 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    7 1lsz:A (2.0) BS02 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    8 1lsz:A (2.0) BS03 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    9 1m01:A (2.1) BS01 NAG 3.2.1.52 GO:0004553 ... O85361 12171933 MOAD: Kd=3mM
    10 1m03:A (1.9) BS01 NAG 3.2.1.52 GO:0004553 ... O85361 12171933
    11 1m04:A (1.95) BS01 NAG 3.2.1.52 GO:0004553 ... O85361 12171933
    12 1o9w:A (1.65) BS01 NAG ? GO:0009289 ... Q99003 12864853 MOAD: Kd=1.18mM
    13 1oio:A (1.7) BS01 NAG ? GO:0009289 ... Q47341 12909017
    14 1oio:A (1.7) BS02 NAG ? GO:0009289 ... Q47341 12909017
    15 1oio:B (1.7) BS01 NAG ? GO:0009289 ... Q47341 12909017
    16 1oio:B (1.7) BS02 NAG ? GO:0009289 ... Q47341 12909017
    17 1uib:A (1.76) BS01 NAG 3.2.1.17 GO:0003796 ... P00698 11983077
    18 1uib:A (1.76) BS02 NAG 3.2.1.17 GO:0003796 ... P00698 11983077
    19 1uib:A (1.76) BS03 NAG 3.2.1.17 GO:0003796 ... P00698 11983077
    20 1uih:A (1.75) BS01 NAG 3.2.1.17 GO:0003796 ... P00698 11983077
    21 1uih:A (1.75) BS02 NAG 3.2.1.17 GO:0003796 ... P00698 11983077
    22 1ukm:B (1.9) BS01 NAG ? GO:0005576 ... Q7T2Q0 14580195
    23 3n13:A (1.7) BS01 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    24 3n13:A (1.7) BS02 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    25 3n15:A (1.94) BS01 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    26 3n15:A (1.94) BS02 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    27 3n17:A (1.2) BS01 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    28 3n17:A (1.2) BS02 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    29 3n18:A (1.6) BS01 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    30 3n18:A (1.6) BS02 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    31 3n18:A (1.6) BS03 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    32 3n18:A (1.6) BS04 NAG 3.2.1.14 GO:0004553 ... D0VV09 20685646
    33 4p7q:A (1.651) BS01 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    34 4p7q:A (1.651) BS02 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    35 4p7q:A (1.651) BS03 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    36 4p7q:A (1.651) BS04 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    37 4p7r:A (1.8) BS01 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    38 4p7r:A (1.8) BS02 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    39 4pqg:A (2.0) BS02 NAG 2.4.1.- GO:0000166 ... A0A0H2URG7 24936067
    40 4pqg:B (2.0) BS02 NAG 2.4.1.- GO:0000166 ... A0A0H2URG7 24936067
    41 5ac5:A (1.84) BS01 NAG 3.2.1.52 GO:0004553 ... A0A0H2US73 26491009
    42 5ac5:B (1.84) BS01 NAG 3.2.1.52 GO:0004553 ... A0A0H2US73 26491009
    43 5eh1:A (1.8) BS02 NAG ? N/A P38484 27599734
    44 5eh1:A (1.8) BS03 NAG ? N/A P38484 27599734
    45 6be3:H (1.6) BS01 NAG N/A N/A N/A 29449370
    46 6be3:L (1.6) BS01 NAG N/A N/A N/A 29449370
    47 6be4:H (1.9) BS01 NAG N/A N/A N/A 29449370
    48 6be4:H (1.9) BS02 NAG N/A N/A N/A 29449370
    49 6be4:L (1.9) BS01 NAG N/A N/A N/A 29449370
    50 6be4:L (1.9) BS02 NAG N/A N/A N/A 29449370
    51 6k5j:A (1.903) BS01 NAG N/A GO:0004553 ... N/A 31501879
    52 6kxl:A (1.35) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    53 6kxl:A (1.35) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    54 6kxl:A (1.35) BS04 NAG ? GO:0004553 ... F8WSX2 N/A
    55 6kxl:B (1.35) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    56 6kxl:B (1.35) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    57 6kxl:B (1.35) BS04 NAG ? GO:0004553 ... F8WSX2 N/A
    58 6kxm:A (1.95) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    59 6kxm:A (1.95) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    60 6kxm:B (1.95) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    61 6kxm:B (1.95) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    62 6kxn:A (1.5) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    63 6kxn:A (1.5) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    64 6kxn:B (1.5) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    65 6kxn:B (1.5) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    66 6rym:A (1.46) BS03 NAG ? N/A P23805 31562242
    67 7ehp:A (2.01) BS01 NAG N/A N/A N/A 34195603
    68 7ehp:A (2.01) BS02 NAG N/A N/A N/A 34195603
    69 7ehp:B (2.01) BS01 NAG N/A N/A N/A 34195603
    70 7ehp:B (2.01) BS02 NAG N/A N/A N/A 34195603
    71 7ehq:A (1.7) BS01 NAG N/A N/A N/A 34195603
    72 7ehq:A (1.7) BS02 NAG N/A N/A N/A 34195603
    73 7ehu:A (1.2) BS01 NAG N/A N/A N/A 34195603
    74 7ehu:A (1.2) BS02 NAG N/A N/A N/A 34195603
    75 7ehu:A (1.2) BS03 NAG N/A N/A N/A 34195603
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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