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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 993 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7dii:A (2.403) BS02 NA ? GO:0005886 ... O67854 33811858
    802 7dii:A (2.403) BS03 NA ? GO:0005886 ... O67854 33811858
    803 7dii:B (2.403) BS02 NA ? GO:0005886 ... O67854 33811858
    804 7dii:B (2.403) BS03 NA ? GO:0005886 ... O67854 33811858
    805 7dix:A (3.49) BS01 NA ? GO:0005886 ... O67854 33811858
    806 7dix:A (3.49) BS02 NA ? GO:0005886 ... O67854 33811858
    807 7dix:B (3.49) BS01 NA ? GO:0005886 ... O67854 33811858
    808 7dj1:A (3.528) BS02 NA ? GO:0005886 ... O67854 33811858
    809 7dj1:A (3.528) BS03 NA ? GO:0005886 ... O67854 33811858
    810 7dj1:B (3.528) BS02 NA ? GO:0005886 ... O67854 33811858
    811 7dj1:B (3.528) BS03 NA ? GO:0005886 ... O67854 33811858
    812 7dj2:A (2.4) BS02 NA ? GO:0005886 ... O67854 33811858
    813 7dj2:B (2.4) BS02 NA ? GO:0005886 ... O67854 33811858
    814 7djc:A (2.701) BS02 NA ? GO:0005886 ... O67854 33811858
    815 7djc:A (2.701) BS03 NA ? GO:0005886 ... O67854 33811858
    816 7e1z:A (3.2) BS01 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    817 7e1z:A (3.2) BS02 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    818 7e1z:A (3.2) BS03 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    819 7e1z:A (3.2) BS04 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    820 7e21:A (2.9) BS01 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    821 7e21:A (2.9) BS02 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    822 7e21:A (2.9) BS03 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    823 7e21:A (2.9) BS04 NA 7.2.2.13 GO:0000166 ... P05023 35803952
    824 7egk:A (2.7) BS01 NA ? GO:0016020 ... P73953 34031249
    825 7egk:C (2.7) BS01 NA ? GO:0016020 ... P73953 34031249
    826 7egk:E (2.7) BS01 NA ? GO:0016020 ... P73953 34031249
    827 7egl:A (3.2) BS02 NA ? GO:0016020 ... P73953 34031249
    828 7jsj:A (3.12) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    829 7jsj:A (3.12) BS03 NA ? GO:0005343 ... Q86YT5 33597751
    830 7jsj:B (3.12) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    831 7jsj:B (3.12) BS03 NA ? GO:0005343 ... Q86YT5 33597751
    832 7jsk:A (3.04) BS01 NA ? GO:0005343 ... Q86YT5 33597751
    833 7jsk:A (3.04) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    834 7jsk:B (3.04) BS01 NA ? GO:0005343 ... Q86YT5 33597751
    835 7jsk:B (3.04) BS02 NA ? GO:0005343 ... Q86YT5 33597751
    836 7kz3:D (1.55) BS01 NA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    837 7lia:A (3.3) BS03 NA ? GO:0016020 ... P31645 34851672
    838 7lia:A (3.3) BS04 NA ? GO:0016020 ... P31645 34851672
    839 7o1u:A (1.7) BS05 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    840 7o1u:A (1.7) BS06 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    841 7o1w:A (1.8) BS07 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    842 7o1y:A (1.7) BS07 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    843 7o20:A (1.8) BS07 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    844 7o22:A (1.8) BS04 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    845 7q36:A (2.6) BS01 NA ? GO:0016020 ... N0DKS8 35422073
    846 7qha:B (2.97) BS01 NA ? GO:0005886 ... Q6LPW1 36849793
    847 7qha:B (2.97) BS02 NA ? GO:0005886 ... Q6LPW1 36849793
    848 7qoa:A (2.4) BS04 NA N/A GO:0015209 ... N/A 35775318
    849 7qoa:B (2.4) BS05 NA N/A GO:0015209 ... N/A 35775318
    850 7r63:B (2.0) BS01 NA N/A N/A N/A 35202650
    851 7r63:B (2.0) BS02 NA N/A N/A N/A 35202650
    852 7r63:C (2.0) BS01 NA N/A N/A N/A 35202650
    853 7r63:D (2.0) BS01 NA N/A N/A N/A 35202650
    854 7rtm:A (3.4) BS01 NA ? GO:0005452 ... Q6RVG2 34584093
    855 7rtm:B (3.4) BS01 NA ? GO:0005452 ... Q6RVG2 34584093
    856 7s9j:A (1.91) BS04 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    857 7s9j:A (1.91) BS05 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    858 7s9k:A (1.97) BS04 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    859 7s9k:A (1.97) BS05 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    860 7s9l:A (2.05) BS04 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    861 7s9l:A (2.05) BS05 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    862 7s9m:A (2.31) BS04 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    863 7s9m:A (2.31) BS05 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    864 7s9o:A (2.23) BS04 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    865 7s9o:A (2.23) BS05 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    866 7s9p:A (1.86) BS08 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    867 7s9p:A (1.86) BS09 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    868 7s9q:A (1.9) BS04 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    869 7s9q:A (1.9) BS07 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    870 7t9g:A (2.83) BS01 NA ? GO:0005886 ... Q9KNE0 35551191
    871 7t9g:A (2.83) BS02 NA ? GO:0005886 ... Q9KNE0 35551191
    872 7t9g:Y (2.83) BS01 NA ? GO:0005886 ... Q9KNE0 35551191
    873 7t9g:Y (2.83) BS02 NA ? GO:0005886 ... Q9KNE0 35551191
    874 7uuz:A (3.2) BS01 NA ? GO:0005634 ... Q63008 36517601
    875 7uv0:A (3.1) BS01 NA ? GO:0005634 ... Q63008 36517601
    876 7uv0:A (3.1) BS02 NA ? GO:0005634 ... Q63008 36517601
    877 7y6i:A (2.85) BS02 NA ? GO:0002021 ... P55017 36351028
    878 7y6i:A (2.85) BS04 NA ? GO:0002021 ... P55017 36351028
    879 7y6i:B (2.85) BS02 NA ? GO:0002021 ... P55017 36351028
    880 7y6i:B (2.85) BS04 NA ? GO:0002021 ... P55017 36351028
    881 7y7w:A (2.4) BS02 NA ? GO:0005332 ... P30531 37400655
    882 7y7w:A (2.4) BS03 NA ? GO:0005332 ... P30531 37400655
    883 7y7y:A (2.4) BS02 NA ? GO:0005332 ... P30531 37400655
    884 7y7y:A (2.4) BS03 NA ? GO:0005332 ... P30531 37400655
    885 7ytw:A (3.2) BS01 NA ? GO:0005737 ... Q9Z2J0 36914666
    886 7ytw:A (3.2) BS02 NA ? GO:0005737 ... Q9Z2J0 36914666
    887 7ytw:B (3.2) BS01 NA ? GO:0005737 ... Q9Z2J0 36914666
    888 7ytw:B (3.2) BS02 NA ? GO:0005737 ... Q9Z2J0 36914666
    889 7zgo:A (2.55) BS01 NA ? GO:0005515 ... P55011 36239040
    890 7zgo:B (2.55) BS01 NA ? GO:0005515 ... P55011 36239040
    891 7zyi:A (2.88) BS05 NA ? GO:0001618 ... Q14973 35726088
    892 7zyi:A (2.88) BS06 NA ? GO:0001618 ... Q14973 35726088
    893 8a1t:B (3.37) BS03 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    894 8a1u:B (2.86) BS04 NA 7.2.1.1 GO:0005886 ... Q9KPS2 37710014
    895 8a1u:B (2.86) BS05 NA 7.2.1.1 GO:0005886 ... Q9KPS2 37710014
    896 8a1v:B (2.73) BS04 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    897 8a1v:B (2.73) BS05 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    898 8a1w:B (2.56) BS04 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    899 8a1w:B (2.56) BS05 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    900 8acy:B (3.5) BS03 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    901 8ad4:A (1.5) BS04 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    902 8ad4:A (1.5) BS05 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    903 8ad4:B (1.5) BS05 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    904 8ad4:B (1.5) BS06 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    905 8ad5:A (1.65) BS02 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    906 8ad5:B (1.65) BS02 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    907 8b01:B (3.03) BS01 NA ? GO:0005886 ... Q6LPW1 36849793
    908 8b01:B (3.03) BS02 NA ? GO:0005886 ... Q6LPW1 36849793
    909 8bbu:A (1.1) BS01 NA 3.2.1.17 GO:0003796 ... Q25091 37095116
    910 8bbu:B (1.1) BS01 NA 3.2.1.17 GO:0003796 ... Q25091 37095116
    911 8brd:B (2.48) BS01 NA ? GO:0005515 ... O06873 37500658
    912 8brd:E (2.48) BS01 NA ? GO:0005515 ... O06873 37500658
    913 8brd:G (2.48) BS01 NA ? N/A A0A7Y4B4T7 37500658
    914 8cl5:A (1.31) BS01 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    915 8cl5:A (1.31) BS02 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    916 8cl6:A (1.32) BS01 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    917 8cl6:A (1.32) BS02 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    918 8ctc:A (2.8) BS02 NA ? GO:0001662 ... P43005 37142617
    919 8ctc:A (2.8) BS03 NA ? GO:0001662 ... P43005 37142617
    920 8ctc:A (2.8) BS04 NA ? GO:0001662 ... P43005 37142617
    921 8ctc:B (2.8) BS02 NA ? GO:0001662 ... P43005 37142617
    922 8ctc:B (2.8) BS03 NA ? GO:0001662 ... P43005 37142617
    923 8ctc:B (2.8) BS04 NA ? GO:0001662 ... P43005 37142617
    924 8ctc:C (2.8) BS02 NA ? GO:0001662 ... P43005 37142617
    925 8ctc:C (2.8) BS03 NA ? GO:0001662 ... P43005 37142617
    926 8ctc:C (2.8) BS04 NA ? GO:0001662 ... P43005 37142617
    927 8ctd:A (3.42) BS02 NA ? GO:0001662 ... P43005 37142617
    928 8ctd:A (3.42) BS03 NA ? GO:0001662 ... P43005 37142617
    929 8ctd:A (3.42) BS04 NA ? GO:0001662 ... P43005 37142617
    930 8cv2:A (2.44) BS01 NA ? GO:0001662 ... P43005 37142617
    931 8cv2:A (2.44) BS02 NA ? GO:0001662 ... P43005 37142617
    932 8cv2:B (2.44) BS01 NA ? GO:0001662 ... P43005 37142617
    933 8cv2:B (2.44) BS02 NA ? GO:0001662 ... P43005 37142617
    934 8cv2:C (2.44) BS01 NA ? GO:0001662 ... P43005 37142617
    935 8cv2:C (2.44) BS02 NA ? GO:0001662 ... P43005 37142617
    936 8cv3:A (3.04) BS01 NA ? GO:0001662 ... P43005 37142617
    937 8cv3:A (3.04) BS02 NA ? GO:0001662 ... P43005 37142617
    938 8fho:A (2.95) BS03 NA ? GO:0006811 ... P55017 36792826
    939 8fho:B (2.95) BS04 NA ? GO:0006811 ... P55017 36792826
    940 8fhp:A (3.04) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    941 8fhp:B (3.04) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    942 8fhq:A (2.81) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    943 8fhq:B (2.81) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    944 8fhr:A (2.9) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    945 8fhr:B (2.9) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    946 8fht:A (3.02) BS01 NA ? GO:0002021 ... P55017 36792826
    947 8fht:B (3.02) BS01 NA ? GO:0002021 ... P55017 36792826
    948 8gnk:A (3.1) BS02 NA ? GO:0003333 ... P23978 37400654
    949 8gz1:B (3.4) BS01 NA ? GO:0001508 ... Q9UQD0 36823201
    950 8hb0:A (2.9) BS03 NA ? GO:0000017 ... P31639 38057552
    951 8hdh:A (3.1) BS03 NA ? GO:0000017 ... P31639 38057552
    952 8hez:A (2.8) BS03 NA ? GO:0000017 ... P31639 38057552
    953 8hg7:A (3.1) BS03 NA ? GO:0000017 ... P31639 38057552
    954 8hir:A (3.18) BS01 NA ? GO:0006813 ... Q5JUK3 37494189
    955 8hir:B (3.18) BS01 NA ? GO:0006813 ... Q5JUK3 37494189
    956 8hir:C (3.18) BS01 NA ? GO:0006813 ... Q5JUK3 37494189
    957 8hir:D (3.18) BS01 NA ? GO:0006813 ... Q5JUK3 37494189
    958 8hkk:A (2.84) BS02 NA ? GO:0006813 ... Q5JUK3 37494189
    959 8hkq:A (2.9) BS03 NA ? GO:0006813 ... Q5JUK3 37494189
    960 8i5g:A (2.7) BS04 NA ? GO:0001518 ... Q15858 37270609
    961 8i5y:A (2.6) BS07 NA ? GO:0001518 ... Q15858 37270609
    962 8oyf:A (2.1) BS01 NA ? GO:0016020 ... Q9K0A9 37645971
    963 8oyf:A (2.1) BS02 NA ? GO:0016020 ... Q9K0A9 37645971
    964 8oyg:A (2.3) BS01 NA ? GO:0016020 ... Q9K0A9 37645971
    965 8oyg:A (2.3) BS02 NA ? GO:0016020 ... Q9K0A9 37645971
    966 8p1c:A (1.58) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    967 8p1d:A (1.6) BS01 NA 3.2.1.17 GO:0003796 ... P00698 37830774
    968 8sgj:A (3.1) BS07 NA ? GO:0005432 ... P32418 37794011
    969 8sgj:A (3.1) BS08 NA ? GO:0005432 ... P32418 37794011
    970 8sgj:A (3.1) BS09 NA ? GO:0005432 ... P32418 37794011
    971 8w6c:A (2.7) BS01 NA ? GO:0005515 ... Q13183 38552027
    972 8w6c:A (2.7) BS02 NA ? GO:0005515 ... Q13183 38552027
    973 8w6c:B (2.7) BS03 NA ? GO:0005515 ... Q13183 38552027
    974 8w6c:B (2.7) BS04 NA ? GO:0005515 ... Q13183 38552027
    975 8w6d:A (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    976 8w6d:B (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    977 8w6h:A (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    978 8w6h:B (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    979 8w6n:A (3.2) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    980 8w6o:A (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    981 8w6o:A (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    982 8w6o:B (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    983 8w6o:B (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    984 9eo4:B (2.66) BS05 NA N/A GO:0001504 ... Q01959 39112703
    985 9etn:A (1.584) BS10 NA N/A GO:0005515 ... Q8R555 39029889
    986 9euo:A (3.2) BS04 NA N/A N/A Q7K4Y6 39010681
    987 9eup:A (3.0) BS03 NA N/A N/A Q7K4Y6 39010681
    988 9eup:A (3.0) BS04 NA N/A N/A Q7K4Y6 39010681
    989 9ex0:A (1.45) BS01 NA N/A GO:0003796 ... P00698 38842919
    990 9ex2:A (1.172) BS01 NA N/A GO:0003796 ... P00698 38842919
    991 9fcf:A (2.36) BS02 NA N/A N/A G7IFI7 39186852
    992 9fcg:A (1.54) BS03 NA N/A N/A G7IFI7 39186852
    993 9fcg:A (1.54) BS04 NA N/A N/A G7IFI7 39186852
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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