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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 993 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4oyf:D (3.41) BS01 NA ? GO:0005283 ... O59010 24842876
    402 4oyf:E (3.41) BS01 NA ? GO:0005283 ... O59010 24842876
    403 4oyf:F (3.41) BS01 NA ? GO:0005283 ... O59010 24842876
    404 4poe:A (1.07) BS03 NA 1.7.3.3 GO:0004846 ... Q00511 25005084
    405 4pr8:A (1.16) BS03 NA 1.7.3.3 GO:0004846 ... Q00511 25005084
    406 4puv:A (1.3) BS02 NA 1.7.3.3 GO:0004846 ... Q00511 25005084
    407 4pv2:A (1.79) BS01 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    408 4pv2:A (1.79) BS02 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    409 4pv2:C (1.79) BS01 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    410 4pv2:C (1.79) BS02 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    411 4pv3:A (2.09) BS01 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    412 4pv3:A (2.09) BS02 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    413 4pv3:C (2.09) BS01 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    414 4pv3:C (2.09) BS02 NA 3.5.1.1 GO:0016787 ... V7CU13 25004963
    415 4u9u:A (1.55) BS03 NA 7.2.1.1 GO:0006814 ... Q9X4Q8 25471880
    416 4u9u:B (1.55) BS03 NA 7.2.1.1 GO:0006814 ... Q9X4Q8 25471880
    417 4us3:A (2.098) BS02 NA ? GO:0016020 ... Q9KDT3 25282149
    418 4us3:A (2.098) BS03 NA ? GO:0016020 ... Q9KDT3 25282149
    419 4us4:A (2.6) BS02 NA ? GO:0016020 ... Q9KDT3 25282149
    420 4us4:A (2.6) BS03 NA ? GO:0016020 ... Q9KDT3 25282149
    421 4us7:B (1.96) BS01 NA ? GO:0043683 ... Q8EII5 25886849
    422 4wxq:A (2.15) BS02 NA ? N/A Q99972 25524706
    423 4wxs:A (1.9) BS05 NA ? N/A Q99972 25524706
    424 4wxu:A (2.092) BS04 NA ? N/A Q99972 25524706
    425 4xp1:A (2.89) BS02 NA ? GO:0016020 ... Q7K4Y6 25970245
    426 4xp1:A (2.89) BS03 NA ? GO:0016020 ... Q7K4Y6 25970245
    427 4xp1:L (2.89) BS01 NA N/A N/A N/A 25970245
    428 4xp4:A (2.8) BS03 NA ? GO:0016020 ... Q7K4Y6 25970245
    429 4xp4:A (2.8) BS04 NA ? GO:0016020 ... Q7K4Y6 25970245
    430 4xp5:A (3.3) BS06 NA ? GO:0016020 ... Q7K4Y6 25970245
    431 4xp5:A (3.3) BS08 NA ? GO:0016020 ... Q7K4Y6 25970245
    432 4xp6:A (3.1) BS03 NA ? GO:0016020 ... Q7K4Y6 25970245
    433 4xp6:A (3.1) BS04 NA ? GO:0016020 ... Q7K4Y6 25970245
    434 4xp9:C (2.8) BS03 NA ? GO:0016020 ... Q7K4Y6 25970245
    435 4xp9:C (2.8) BS04 NA ? GO:0016020 ... Q7K4Y6 25970245
    436 4xpa:A (2.95) BS06 NA ? GO:0016020 ... Q7K4Y6 25970245
    437 4xpa:A (2.95) BS07 NA ? GO:0016020 ... Q7K4Y6 25970245
    438 4xpb:A (3.05) BS02 NA ? GO:0016020 ... Q7K4Y6 25970245
    439 4xpb:A (3.05) BS06 NA ? GO:0016020 ... Q7K4Y6 25970245
    440 4xpf:A (3.273) BS04 NA ? GO:0016020 ... Q7K4Y6 25970245
    441 4xpf:A (3.273) BS05 NA ? GO:0016020 ... Q7K4Y6 25970245
    442 4xpg:A (3.21) BS04 NA ? GO:0016020 ... Q7K4Y6 25970245
    443 4xpg:A (3.21) BS05 NA ? GO:0016020 ... Q7K4Y6 25970245
    444 4xph:A (2.9) BS03 NA ? GO:0016020 ... Q7K4Y6 25970245
    445 4xph:A (2.9) BS04 NA ? GO:0016020 ... Q7K4Y6 25970245
    446 4xph:L (2.9) BS01 NA N/A N/A N/A 25970245
    447 4xpt:A (3.36) BS07 NA ? GO:0016020 ... Q7K4Y6 25970245
    448 4xpt:A (3.36) BS08 NA ? GO:0016020 ... Q7K4Y6 25970245
    449 4xtl:A (1.45) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    450 4xtn:A (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    451 4xtn:B (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    452 4xtn:C (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    453 4xtn:D (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    454 4xtn:E (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    455 4xtn:F (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    456 4xtn:G (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    457 4xtn:H (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    458 4xtn:I (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    459 4xtn:J (2.2) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    460 4xto:A (2.8) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    461 4xto:B (2.8) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    462 4xto:C (2.8) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    463 4xto:D (2.8) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    464 4xto:E (2.8) BS01 NA ? GO:0016020 ... N0DKS8 25849142
    465 4zi6:A (2.0) BS04 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    466 4zi6:B (2.0) BS04 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    467 4zi6:C (2.0) BS04 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    468 4zi6:D (2.0) BS04 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    469 4zi6:E (2.0) BS04 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    470 4zi6:F (2.0) BS04 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    471 4zla:A (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    472 4zla:B (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    473 4zla:C (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    474 4zla:D (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    475 4zla:E (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    476 4zla:F (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    477 5a1a:A (2.2) BS04 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    478 5a1a:A (2.2) BS05 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    479 5a1a:B (2.2) BS04 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    480 5a1a:B (2.2) BS05 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    481 5a1a:C (2.2) BS04 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    482 5a1a:C (2.2) BS05 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    483 5a1a:D (2.2) BS04 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    484 5a1a:D (2.2) BS05 NA 3.2.1.23 GO:0000287 ... P00722 25953817
    485 5a1s:A (2.5) BS01 NA N/A GO:0008514 ... N/A 26636752
    486 5a1s:A (2.5) BS02 NA N/A GO:0008514 ... N/A 26636752
    487 5a1s:B (2.5) BS01 NA N/A GO:0008514 ... N/A 26636752
    488 5a1s:C (2.5) BS01 NA N/A GO:0008514 ... N/A 26636752
    489 5a1s:C (2.5) BS02 NA N/A GO:0008514 ... N/A 26636752
    490 5a1s:D (2.5) BS01 NA N/A GO:0008514 ... N/A 26636752
    491 5a1s:D (2.5) BS02 NA N/A GO:0008514 ... N/A 26636752
    492 5a25:B (1.9) BS02 NA 4.2.1.1
    4.2.1.69    		 GO:0004089 ... P00921 26687908
    493 5cfy:A (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    494 5cfy:A (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    495 5cfy:B (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    496 5cfy:B (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    497 5cfy:C (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    498 5cfy:C (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    499 5cfy:D (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    500 5cfy:D (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    501 5cfy:E (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    502 5cfy:E (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    503 5cfy:F (3.5) BS02 NA ? GO:0005283 ... O59010 24842876
    504 5cfy:F (3.5) BS03 NA ? GO:0005283 ... O59010 24842876
    505 5e9s:A (2.8) BS02 NA ? GO:0015293 ... Q5JID0 27830699
    506 5e9s:A (2.8) BS03 NA ? GO:0015293 ... Q5JID0 27830699
    507 5e9s:A (2.8) BS04 NA ? GO:0015293 ... Q5JID0 27830699
    508 5e9s:B (2.8) BS02 NA ? GO:0015293 ... Q5JID0 27830699
    509 5e9s:B (2.8) BS03 NA ? GO:0015293 ... Q5JID0 27830699
    510 5e9s:B (2.8) BS04 NA ? GO:0015293 ... Q5JID0 27830699
    511 5e9s:C (2.8) BS02 NA ? GO:0015293 ... Q5JID0 27830699
    512 5e9s:C (2.8) BS03 NA ? GO:0015293 ... Q5JID0 27830699
    513 5e9s:C (2.8) BS04 NA ? GO:0015293 ... Q5JID0 27830699
    514 5glk:B (1.7) BS01 NA ? GO:0004553 ... A0A0H5BL38 28204531
    515 5gll:A (1.8) BS01 NA ? GO:0004553 ... A0A0H5BL38 28204531
    516 5glm:A (1.8) BS06 NA ? GO:0004553 ... A0A0H5BL38 28204531
    517 5glm:B (1.8) BS05 NA ? GO:0004553 ... A0A0H5BL38 28204531
    518 5glo:A (1.8) BS01 NA ? GO:0004553 ... A0A0H5BL38 28204531
    519 5glo:B (1.8) BS01 NA ? GO:0004553 ... A0A0H5BL38 28204531
    520 5glq:A (1.7) BS03 NA ? GO:0004553 ... A0A0H5BL38 28204531
    521 5glq:B (1.7) BS03 NA ? GO:0004553 ... A0A0H5BL38 28204531
    522 5hmj:A (1.2999) BS04 NA 3.2.1.17 GO:0003796 ... P00698 26919531
    523 5hwx:A (2.4) BS01 NA ? GO:0005262 ... Q57556 27183196
    524 5hwx:A (2.4) BS02 NA ? GO:0005262 ... Q57556 27183196
    525 5hwy:A (2.098) BS01 NA ? GO:0005262 ... Q57556 27183196
    526 5hwy:A (2.098) BS02 NA ? GO:0005262 ... Q57556 27183196
    527 5hxc:A (2.101) BS02 NA ? GO:0005262 ... Q57556 27183196
    528 5hxc:A (2.101) BS03 NA ? GO:0005262 ... Q57556 27183196
    529 5hxc:A (2.101) BS04 NA ? GO:0005262 ... Q57556 27183196
    530 5hxe:A (2.288) BS01 NA ? GO:0005262 ... Q57556 27183196
    531 5hxe:A (2.288) BS02 NA ? GO:0005262 ... Q57556 27183196
    532 5hxe:A (2.288) BS03 NA ? GO:0005262 ... Q57556 27183196
    533 5hxe:A (2.288) BS04 NA ? GO:0005262 ... Q57556 27183196
    534 5hya:A (1.897) BS01 NA ? GO:0005262 ... Q57556 27183196
    535 5hya:A (1.897) BS02 NA ? GO:0005262 ... Q57556 27183196
    536 5hya:A (1.897) BS03 NA ? GO:0005262 ... Q57556 27183196
    537 5i6x:A (3.14) BS03 NA ? GO:0016020 ... P31645 27049939
    538 5i71:A (3.15) BS03 NA ? GO:0016020 ... P31645 27049939
    539 5i71:A (3.15) BS04 NA ? GO:0016020 ... P31645 27049939
    540 5i73:A (3.24) BS04 NA ? GO:0016020 ... P31645 27049939
    541 5i73:A (3.24) BS05 NA ? GO:0016020 ... P31645 27049939
    542 5i75:A (3.49) BS04 NA ? GO:0016020 ... P31645 27049939
    543 5jdg:A (2.407) BS01 NA ? GO:0005262 ... Q57556 27183196
    544 5jdg:A (2.407) BS02 NA ? GO:0005262 ... Q57556 27183196
    545 5jdh:A (2.203) BS01 NA ? GO:0005262 ... Q57556 27183196
    546 5jdm:A (2.558) BS01 NA ? GO:0005262 ... Q57556 27183196
    547 5jdm:A (2.558) BS02 NA ? GO:0005262 ... Q57556 27183196
    548 5jdn:A (2.3) BS01 NA ? GO:0005262 ... Q57556 27183196
    549 5jdq:A (2.5) BS01 NA ? GO:0005262 ... Q57556 27183196
    550 5jdq:A (2.5) BS02 NA ? GO:0005262 ... Q57556 27183196
    551 5jdq:A (2.5) BS03 NA ? GO:0005262 ... Q57556 27183196
    552 5l05:A (1.7) BS02 NA 1.11.1.21 GO:0004096 ... Q3JNW6 12628252
    553 5l05:B (1.7) BS02 NA 1.11.1.21 GO:0004096 ... Q3JNW6 12628252
    554 5lzq:A (3.495) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    555 5lzq:B (3.495) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    556 5m5k:A (1.84) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    557 5m5k:B (1.84) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    558 5m5k:C (1.84) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    559 5m65:A (1.945) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    560 5m65:B (1.945) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    561 5m66:A (1.951) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    562 5m66:B (1.951) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    563 5m66:C (1.951) BS03 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    564 5m66:D (1.951) BS04 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    565 5m67:A (1.54) BS01 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    566 5m67:B (1.54) BS02 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    567 5m67:C (1.54) BS01 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    568 5m67:D (1.54) BS02 NA 3.13.2.1 GO:0004013 ... A0A087WNH6 28512574
    569 5mnu:A (1.56) BS03 NA 3.5.2.6 GO:0008658 ... P14489 28678295
    570 5mox:B (1.41) BS02 NA 3.5.2.6 GO:0008658 ... P14489 28678295
    571 5moz:A (1.34) BS02 NA 3.5.2.6 GO:0008658 ... P14489 28678295
    572 5moz:A (1.34) BS03 NA 3.5.2.6 GO:0008658 ... P14489 28678295
    573 5moz:A (1.34) BS04 NA 3.5.2.6 GO:0008658 ... P14489 28678295
    574 5moz:B (1.34) BS01 NA 3.5.2.6 GO:0008658 ... P14489 28678295
    575 5nv9:A (1.95) BS01 NA ? GO:0005886 ... B4EZY7 29717135
    576 5nv9:A (1.95) BS02 NA ? GO:0005886 ... B4EZY7 29717135
    577 5nva:A (2.26) BS01 NA ? GO:0005886 ... B4EZY7 29717135
    578 5nva:A (2.26) BS02 NA ? GO:0005886 ... B4EZY7 29717135
    579 5t73:A (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    580 5t73:A (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    581 5t73:B (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    582 5t73:B (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    583 5t73:C (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    584 5t73:C (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    585 5t73:D (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    586 5t73:D (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    587 5tk0:A (1.795) BS01 NA 3.2.1.17 GO:0003796 ... P00698 28319372
    588 5u9h:A (1.85) BS07 NA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28108654
    589 5w56:A (2.03) BS01 NA ? GO:0007155 ... A1B2F3 28887302
    590 5w56:B (2.03) BS01 NA ? GO:0007155 ... A1B2F3 28887302
    591 5xar:A (3.62) BS01 NA ? GO:0005886 ... P31602 28566738
    592 5xar:B (3.62) BS01 NA ? GO:0005886 ... P31602 28566738
    593 5xar:C (3.62) BS01 NA ? GO:0005886 ... P31602 28566738
    594 5xar:D (3.62) BS01 NA ? GO:0005886 ... P31602 28566738
    595 5xas:A (3.47) BS01 NA ? GO:0005886 ... P31602 28566738
    596 5xas:B (3.47) BS01 NA ? GO:0005886 ... P31602 28566738
    597 5xat:A (3.76) BS01 NA ? GO:0005886 ... P31602 28566738
    598 5xat:B (3.76) BS02 NA ? GO:0005886 ... P31602 28566738
    599 5xat:D (3.76) BS01 NA ? GO:0005886 ... P31602 28566738
    600 6a95:A (2.6) BS02 NA ? GO:0001518 ... D0E0C2 30049784
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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