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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 993 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3b72:A (1.5) BS01 NA 3.2.1.17 GO:0003796 ... P00698 18522744
    202 3bmx:A (1.4) BS01 NA 3.2.1.52 GO:0004553 ... P40406 20826810
    203 3bmx:B (1.4) BS01 NA 3.2.1.52 GO:0004553 ... P40406 20826810
    204 3c32:A (1.72) BS01 NA ? GO:0015276 ... P22756 18549784
    205 3c32:B (1.72) BS01 NA ? GO:0015276 ... P22756 18549784
    206 3dh4:A (2.7) BS02 NA ? GO:0005412 ... P96169 18599740
    207 3dh4:B (2.7) BS02 NA ? GO:0005412 ... P96169 18599740
    208 3dh4:C (2.7) BS02 NA ? GO:0005412 ... P96169 18599740
    209 3dh4:D (2.7) BS02 NA ? GO:0005412 ... P96169 18599740
    210 3f3a:A (2.0) BS05 NA ? GO:0005886 ... O67854 19074341
    211 3f3a:A (2.0) BS06 NA ? GO:0005886 ... O67854 19074341
    212 3f3c:A (2.1) BS02 NA ? GO:0005886 ... O67854 19074341
    213 3f3c:A (2.1) BS03 NA ? GO:0005886 ... O67854 19074341
    214 3f3d:A (2.3) BS01 NA ? GO:0005886 ... O67854 19074341
    215 3f3d:A (2.3) BS02 NA ? GO:0005886 ... O67854 19074341
    216 3f3e:A (1.8) BS02 NA ? GO:0005886 ... O67854 19074341
    217 3f3e:A (1.8) BS03 NA ? GO:0005886 ... O67854 19074341
    218 3f48:A (1.9) BS01 NA ? GO:0005886 ... O67854 19074341
    219 3f48:A (1.9) BS02 NA ? GO:0005886 ... O67854 19074341
    220 3f4i:A (1.95) BS01 NA ? GO:0005886 ... O67854 19074341
    221 3f4i:A (1.95) BS02 NA ? GO:0005886 ... O67854 19074341
    222 3f4j:A (2.15) BS02 NA ? GO:0005886 ... O67854 19074341
    223 3f4j:A (2.15) BS03 NA ? GO:0005886 ... O67854 19074341
    224 3f6u:H (2.8) BS02 NA 3.4.21.69 GO:0004252 ... P04070 12029084
    225 3fc3:A (1.75) BS05 NA ? GO:0046872 ... Q9ZL26 19380375
    226 3fc3:B (1.75) BS05 NA ? GO:0046872 ... Q9ZL26 19380375
    227 3fc3:B (1.75) BS06 NA ? GO:0046872 ... Q9ZL26 19380375
    228 3gjc:A (2.8) BS01 NA ? GO:0005886 ... O67854 19307590
    229 3gjc:B (2.8) BS01 NA ? GO:0005886 ... O67854 19307590
    230 3gjd:A (2.0) BS01 NA ? GO:0005886 ... O67854 19307590
    231 3gjd:A (2.0) BS02 NA ? GO:0005886 ... O67854 19307590
    232 3gox:A (1.5) BS05 NA ? GO:0046872 ... Q9ZL26 19380375
    233 3gox:B (1.5) BS05 NA ? GO:0046872 ... Q9ZL26 19380375
    234 3gox:B (1.5) BS06 NA ? GO:0046872 ... Q9ZL26 19380375
    235 3ijp:A (2.3) BS01 NA 1.17.1.8 GO:0005737 ... Q6G2G3 27917836
    236 3ijp:B (2.3) BS01 NA 1.17.1.8 GO:0005737 ... Q6G2G3 27917836
    237 3kbc:A (3.51) BS02 NA ? GO:0005283 ... O59010 19924125
    238 3kbc:A (3.51) BS03 NA ? GO:0005283 ... O59010 19924125
    239 3kbc:B (3.51) BS02 NA ? GO:0005283 ... O59010 19924125
    240 3kbc:B (3.51) BS03 NA ? GO:0005283 ... O59010 19924125
    241 3kbc:C (3.51) BS02 NA ? GO:0005283 ... O59010 19924125
    242 3kbc:C (3.51) BS03 NA ? GO:0005283 ... O59010 19924125
    243 3me2:R (2.8) BS01 NA ? N/A O35305 20483727
    244 3me4:A (2.01) BS01 NA ? N/A O35305 20483727
    245 3me4:B (2.01) BS01 NA ? N/A O35305 20483727
    246 3mmo:A (1.55) BS12 NA 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    247 3mmo:B (1.55) BS12 NA 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    248 3ndh:A (1.3) BS03 NA ? N/A Q9HJY3 20861000
    249 3ndh:B (1.3) BS03 NA ? N/A Q9HJY3 20861000
    250 3nvd:A (1.836) BS02 NA 3.2.1.52 GO:0004553 ... P40406 20826810
    251 3nvd:B (1.836) BS02 NA 3.2.1.52 GO:0004553 ... P40406 20826810
    252 3ond:A (1.17) BS03 NA 3.13.2.1 GO:0004013 ... Q9SP37 22349223
    253 3ond:B (1.17) BS04 NA 3.13.2.1 GO:0004013 ... Q9SP37 22349223
    254 3one:A (1.35) BS03 NA 3.13.2.1 GO:0004013 ... Q9SP37 22349223
    255 3one:B (1.35) BS04 NA 3.13.2.1 GO:0004013 ... Q9SP37 22349223
    256 3onf:A (2.0) BS03 NA 3.13.2.1 GO:0004013 ... Q9SP37 22349223
    257 3onf:B (2.0) BS04 NA 3.13.2.1 GO:0004013 ... Q9SP37 22349223
    258 3pak:A (1.9) BS02 NA ? N/A P08427 21047777
    259 3paq:A (2.1) BS02 NA ? N/A P08427 21047777
    260 3qs4:A (2.631) BS04 NA ? GO:0005886 ... O67854 21952050
    261 3qs4:A (2.631) BS05 NA ? GO:0005886 ... O67854 21952050
    262 3qs5:A (2.6) BS02 NA ? GO:0005886 ... O67854 21952050
    263 3qs5:A (2.6) BS03 NA ? GO:0005886 ... O67854 21952050
    264 3qs6:A (2.801) BS02 NA ? GO:0005886 ... O67854 21952050
    265 3qs6:A (2.801) BS03 NA ? GO:0005886 ... O67854 21952050
    266 3r0x:A (1.93) BS01 NA 4.3.1.18 GO:0006520 ... Q8ZL08 21668644
    267 3s18:A (2.2) BS04 NA ? GO:0046872 ... G1K3S0 25559942
    268 3sya:A (2.98) BS01 NA ? GO:0005242 ... P48542 21962516
    269 3syo:A (3.54) BS01 NA ? GO:0005242 ... P48542 21962516
    270 3tij:A (2.436) BS02 NA ? GO:0005337 ... Q9KPL5 22407322
    271 3tmu:A (1.9) BS01 NA 3.2.1.17 GO:0003796 ... P00698 21931220
    272 3tmv:A (1.9) BS01 NA 3.2.1.17 GO:0003796 ... P00698 21931220
    273 3tmw:A (1.9) BS01 NA 3.2.1.17 GO:0003796 ... P00698 21931220
    274 3tmx:A (1.9) BS01 NA 3.2.1.17 GO:0003796 ... P00698 21931220
    275 3tt1:A (3.099) BS01 NA ? GO:0005886 ... O67854 22230955
    276 3tt1:A (3.099) BS02 NA ? GO:0005886 ... O67854 22230955
    277 3tt1:B (3.099) BS01 NA ? GO:0005886 ... O67854 22230955
    278 3tt1:B (3.099) BS02 NA ? GO:0005886 ... O67854 22230955
    279 3tu0:A (2.994) BS01 NA ? GO:0005886 ... O67854 22230955
    280 3usg:A (2.502) BS02 NA ? GO:0005886 ... O67854 22245965
    281 3usg:A (2.502) BS04 NA ? GO:0005886 ... O67854 22245965
    282 3usi:A (3.106) BS01 NA ? GO:0005886 ... O67854 22245965
    283 3usi:A (3.106) BS02 NA ? GO:0005886 ... O67854 22245965
    284 3usi:B (3.106) BS01 NA ? GO:0005886 ... O67854 22245965
    285 3usi:B (3.106) BS02 NA ? GO:0005886 ... O67854 22245965
    286 3usj:A (3.5) BS02 NA ? GO:0005886 ... O67854 22245965
    287 3usj:A (3.5) BS03 NA ? GO:0005886 ... O67854 22245965
    288 3usj:B (3.5) BS02 NA ? GO:0005886 ... O67854 22245965
    289 3usj:B (3.5) BS03 NA ? GO:0005886 ... O67854 22245965
    290 3usk:A (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    291 3usk:A (4.5) BS03 NA ? GO:0005886 ... O67854 22245965
    292 3usk:B (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    293 3usk:B (4.5) BS03 NA ? GO:0005886 ... O67854 22245965
    294 3usk:C (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    295 3usk:C (4.5) BS03 NA ? GO:0005886 ... O67854 22245965
    296 3usk:D (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    297 3usk:D (4.5) BS03 NA ? GO:0005886 ... O67854 22245965
    298 3usl:A (2.71) BS01 NA ? GO:0005886 ... O67854 22245965
    299 3usl:A (2.71) BS02 NA ? GO:0005886 ... O67854 22245965
    300 3usm:A (3.008) BS01 NA ? GO:0005886 ... O67854 22245965
    301 3usm:A (3.008) BS02 NA ? GO:0005886 ... O67854 22245965
    302 3uso:A (4.5) BS01 NA ? GO:0005886 ... O67854 22245965
    303 3uso:A (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    304 3uso:B (4.5) BS01 NA ? GO:0005886 ... O67854 22245965
    305 3uso:B (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    306 3usp:A (2.1) BS01 NA ? GO:0005886 ... O67854 22245965
    307 3usp:A (2.1) BS02 NA ? GO:0005886 ... O67854 22245965
    308 3v5u:A (1.9) BS01 NA ? GO:0005262 ... Q57556 22323814
    309 3v5u:A (1.9) BS03 NA ? GO:0005262 ... Q57556 22323814
    310 3v5u:A (1.9) BS04 NA ? GO:0005262 ... Q57556 22323814
    311 3v6n:A (2.2) BS03 NA ? GO:0046872 ... G1K3R9 25559942
    312 3v6n:B (2.2) BS03 NA ? GO:0046872 ... G1K3R9 25559942
    313 3wnu:A (2.2) BS02 NA 1.11.1.21 GO:0004096 ... Q31MN3 24598912
    314 3wnu:A (2.2) BS03 NA 1.11.1.21 GO:0004096 ... Q31MN3 24598912
    315 3wv1:A (1.98) BS05 NA 3.4.24.- GO:0004222 ... P45452 25264600
    316 3wv1:B (1.98) BS05 NA 3.4.24.- GO:0004222 ... P45452 25264600
    317 3zux:A (2.2) BS01 NA ? GO:0016020 ... Q9K0A9 21976025
    318 3zux:A (2.2) BS02 NA ? GO:0016020 ... Q9K0A9 21976025
    319 3zuy:A (2.2) BS01 NA ? GO:0016020 ... Q9K0A9 21976025
    320 3zuy:A (2.2) BS02 NA ? GO:0016020 ... Q9K0A9 21976025
    321 4ain:B (3.1) BS01 NA ? GO:0005886 ... P54582 22940865
    322 4d1a:A (3.4) BS02 NA ? GO:0005886 ... D6R8X8 24952894
    323 4d1b:A (3.8) BS02 NA ? GO:0005886 ... D6R8X8 24952894
    324 4d1c:A (3.7) BS02 NA ? GO:0005886 ... D6R8X8 24952894
    325 4d1d:A (3.7) BS03 NA ? GO:0005886 ... D6R8X8 24952894
    326 4d40:B (1.669) BS01 NA ? GO:0043683 ... Q8EII5 25886849
    327 4eiy:A (1.8) BS02 NA ? GO:0001609 ... P0ABE7
    P29274
    22798613
    328 4f35:A (3.196) BS01 NA ? GO:0005886 ... Q9KNE0 23086149
    329 4f35:B (3.196) BS01 NA ? GO:0005886 ... Q9KNE0 23086149
    330 4f35:C (3.196) BS01 NA ? GO:0005886 ... Q9KNE0 23086149
    331 4f35:D (3.196) BS01 NA ? GO:0005886 ... Q9KNE0 23086149
    332 4fxz:A (2.601) BS02 NA ? GO:0005886 ... O67854 22836580
    333 4fxz:A (2.601) BS03 NA ? GO:0005886 ... O67854 22836580
    334 4fy0:A (3.0) BS01 NA ? GO:0005886 ... O67854 22836580
    335 4fy0:A (3.0) BS02 NA ? GO:0005886 ... O67854 22836580
    336 4hfi:A (2.4) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    337 4hfi:E (2.4) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    338 4il4:A (3.3) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    339 4il4:E (3.3) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    340 4il9:A (2.83) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    341 4il9:B (2.83) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    342 4il9:C (2.83) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    343 4il9:E (2.83) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    344 4ilb:A (3.15) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    345 4ilb:B (3.15) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    346 4ilb:C (3.15) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    347 4ilb:E (3.15) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    348 4ilc:B (2.99) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    349 4ilc:C (2.99) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    350 4ilc:E (2.99) BS01 NA ? GO:0004888 ... Q7NDN8 23403925
    351 4izm:A (4.5) BS01 NA ? GO:0005283 ... O59010 23563139
    352 4izm:A (4.5) BS02 NA ? GO:0005283 ... O59010 23563139
    353 4izm:B (4.5) BS01 NA ? GO:0005283 ... O59010 23563139
    354 4izm:B (4.5) BS02 NA ? GO:0005283 ... O59010 23563139
    355 4izm:C (4.5) BS01 NA ? GO:0005283 ... O59010 23563139
    356 4izm:C (4.5) BS02 NA ? GO:0005283 ... O59010 23563139
    357 4llh:A (2.8) BS02 NA ? GO:0005886 ... P54582 25023443
    358 4llh:B (2.8) BS02 NA ? GO:0005886 ... P54582 25023443
    359 4m48:A (2.955) BS01 NA ? GO:0016020 ... Q7K4Y6 24037379
    360 4m48:A (2.955) BS02 NA ? GO:0016020 ... Q7K4Y6 24037379
    361 4mm4:A (2.886) BS01 NA ? GO:0005886 ... O67854 24121440
    362 4mm4:A (2.886) BS02 NA ? GO:0005886 ... O67854 24121440
    363 4mm4:B (2.886) BS01 NA ? GO:0005886 ... O67854 24121440
    364 4mm4:B (2.886) BS02 NA ? GO:0005886 ... O67854 24121440
    365 4mm5:A (3.2) BS01 NA ? GO:0005886 ... O67854 24121440
    366 4mm5:A (3.2) BS02 NA ? GO:0005886 ... O67854 24121440
    367 4mm6:A (3.1) BS01 NA ? GO:0005886 ... O67854 24121440
    368 4mm6:A (3.1) BS02 NA ? GO:0005886 ... O67854 24121440
    369 4mm7:A (2.85) BS01 NA ? GO:0005886 ... O67854 24121440
    370 4mm7:A (2.85) BS02 NA ? GO:0005886 ... O67854 24121440
    371 4mm8:A (3.31) BS01 NA ? GO:0005886 ... O67854 24121440
    372 4mm8:A (3.31) BS02 NA ? GO:0005886 ... O67854 24121440
    373 4mm9:A (2.9) BS01 NA ? GO:0005886 ... O67854 24121440
    374 4mm9:A (2.9) BS02 NA ? GO:0005886 ... O67854 24121440
    375 4mma:A (3.3) BS01 NA ? GO:0005886 ... O67854 24121440
    376 4mma:A (3.3) BS02 NA ? GO:0005886 ... O67854 24121440
    377 4mmb:A (2.25) BS01 NA ? GO:0005886 ... O67854 24121440
    378 4mmb:A (2.25) BS02 NA ? GO:0005886 ... O67854 24121440
    379 4mmc:A (2.3) BS01 NA ? GO:0005886 ... O67854 24121440
    380 4mmc:A (2.3) BS02 NA ? GO:0005886 ... O67854 24121440
    381 4mmd:A (2.3) BS01 NA ? GO:0005886 ... O67854 24121440
    382 4mmd:A (2.3) BS02 NA ? GO:0005886 ... O67854 24121440
    383 4mmd:B (2.3) BS01 NA ? GO:0005886 ... O67854 24121440
    384 4mmd:B (2.3) BS02 NA ? GO:0005886 ... O67854 24121440
    385 4mme:A (2.5) BS01 NA ? GO:0005886 ... O67854 24121440
    386 4mme:A (2.5) BS02 NA ? GO:0005886 ... O67854 24121440
    387 4mme:B (2.5) BS01 NA ? GO:0005886 ... O67854 24121440
    388 4mme:B (2.5) BS02 NA ? GO:0005886 ... O67854 24121440
    389 4mmf:A (2.7) BS01 NA ? GO:0005886 ... O67854 24121440
    390 4mmf:A (2.7) BS02 NA ? GO:0005886 ... O67854 24121440
    391 4mmf:B (2.7) BS01 NA ? GO:0005886 ... O67854 24121440
    392 4mmf:B (2.7) BS02 NA ? GO:0005886 ... O67854 24121440
    393 4n6h:A (1.8) BS02 NA ? GO:0004930 ... P0ABE7
    P41143
    24413399
    394 4ntw:A (2.07) BS01 NA ? GO:0005272 ... Q1XA76 24507937
    395 4ntx:A (2.27) BS01 NA ? GO:0005272 ... Q1XA76 24507937
    396 4oqc:A (1.3) BS02 NA 1.7.3.3 GO:0004846 ... Q00511 25005084
    397 4owb:A (1.69) BS01 NA 3.2.1.17 GO:0003796 ... P00698 25195879
    398 4oyf:A (3.41) BS01 NA ? GO:0005283 ... O59010 24842876
    399 4oyf:B (3.41) BS01 NA ? GO:0005283 ... O59010 24842876
    400 4oyf:C (3.41) BS01 NA ? GO:0005283 ... O59010 24842876

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417