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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2icq:A (1.75) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 17028130
    2 2ie7:A (1.75) BS08 N2O ? GO:0001786 ... P14668 17028130
    3 2ie7:A (1.75) BS09 N2O ? GO:0001786 ... P14668 17028130
    4 2ppa:A (1.69) BS04 N2O 1.7.2.1 GO:0005507 ... P38501 18358002
    5 2ppa:B (1.69) BS01 N2O 1.7.2.1 GO:0005507 ... P38501 18358002
    6 2ppa:B (1.69) BS07 N2O 1.7.2.1 GO:0005507 ... P38501 18358002
    7 2ppa:C (1.69) BS01 N2O 1.7.2.1 GO:0005507 ... P38501 18358002
    8 3pk3:A (1.65) BS02 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    9 3pk3:A (1.65) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    10 3pks:A (1.75) BS02 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    11 3pkt:A (1.75) BS02 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    12 3ple:A (1.6) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    13 3plg:A (1.601) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    14 3plh:A (1.8) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    15 3pli:A (1.68) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    16 3plj:A (1.732) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    17 3plm:A (1.621) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    18 3sbr:D (2.24) BS04 N2O 1.7.2.4 GO:0004129 ... P19573 21841804
    19 3sbr:G (2.24) BS04 N2O 1.7.2.4 GO:0004129 ... P19573 21841804
    20 3sbr:H (2.24) BS04 N2O 1.7.2.4 GO:0004129 ... P19573 21841804
    21 4nxc:A (1.55) BS04 N2O 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    22 4nxc:A (1.55) BS05 N2O 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    23 4nxc:A (1.55) BS06 N2O 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    24 4nxc:A (1.55) BS07 N2O 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25211169
    25 4o4z:A (1.7) BS02 N2O 1.7.-.- GO:0005092 ... Q9ER97 25211169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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