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BioLiP
Download all results in tab-seperated text for 214 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7rga:A (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    202 7rga:A (2.9) BS02 MTX 3.2.1.35 N/A P26831 34880210
    203 7rga:B (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    204 7rga:B (2.9) BS02 MTX 3.2.1.35 N/A P26831 34880210
    205 7rga:C (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    206 7rga:D (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    207 7rga:E (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    208 7rga:E (2.9) BS02 MTX 3.2.1.35 N/A P26831 34880210
    209 7rga:F (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    210 7rga:G (2.9) BS01 MTX 3.2.1.35 N/A P26831 34880210
    211 7rga:G (2.9) BS02 MTX 3.2.1.35 N/A P26831 34880210
    212 7tx6:A (3.3) BS01 MTX ? GO:0005506 ... P0ABE7
    P41440    		 36071163
    213 8bwp:A (3.6) BS01 MTX 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 37683641
    214 8xom:A (3.05) BS02 MTX N/A GO:0001409 ... O15439 38886124
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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