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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rf8:A (-1.00) BS01 MTN ? GO:0000184 ... P07260 14675538
    2 1rf8:A (-1.00) BS02 MTN ? GO:0000184 ... P07260 14675538
    3 1zyt:A (1.7) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 19384990
    4 2igc:A (1.4) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 17473014
    5 2k3m:A (-1.00) BS01 MTN ? GO:0016020 ... O06796 19177358
    6 2k3m:A (-1.00) BS02 MTN ? GO:0016020 ... O06796 19177358
    7 2ksq:A (-1.00) BS01 MTN 3.6.5.2 GO:0003924 ... P11076 20601958
    8 2ksq:A (-1.00) BS02 MTN 3.6.5.2 GO:0003924 ... P11076 20601958
    9 2nth:A (1.8) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 17473014
    10 2ou8:A (1.8) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 17473014
    11 2ou9:A (1.55) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 17473014
    12 2q9d:A (1.4) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 18096642
    13 2q9e:B (2.1) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 18096642
    14 2q9e:C (2.1) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 18096642
    15 2ver:N (-1.00) BS01 MTN ? N/A P06731 18086185
    16 2ver:N (-1.00) BS02 MTN ? N/A P06731 18086185
    17 2ver:N (-1.00) BS03 MTN ? N/A P06731 18086185
    18 2w8h:A (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    19 2w8h:B (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    20 2w8h:C (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    21 2w8h:D (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    22 2w8h:E (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    23 2w8h:F (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    24 2w8h:G (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    25 2w8h:H (2.76) BS01 MTN ? GO:0015159 ... Q9X4B7 19294709
    26 2xga:A (2.3) BS01 MTN ? N/A P35530 21075116
    27 2xga:B (2.3) BS01 MTN ? N/A P35530 21075116
    28 2xiu:A (1.5) BS01 MTN ? GO:0003677 ... Q8VL32 21271275
    29 3g3w:A (2.3) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 19384990
    30 3g3x:A (1.8) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 19384990
    31 3ifx:A (3.56) BS01 MTN ? N/A P0A334 20092291
    32 3ifx:B (3.56) BS02 MTN ? N/A P0A334 20092291
    33 3ifx:C (3.56) BS02 MTN ? N/A P0A334 20092291
    34 3ifx:D (3.56) BS01 MTN ? N/A P0A334 20092291
    35 3m8b:A (2.44) BS05 MTN ? GO:0005509 ... P06129 20816073
    36 3m8d:A (2.44) BS06 MTN ? GO:0005509 ... P06129 20816073
    37 3mpn:A (2.25) BS02 MTN ? GO:0005886 ... O67854 20964375
    38 3mpq:A (2.25) BS02 MTN ? GO:0005886 ... O67854 20964375
    39 3rgm:A (2.6) BS07 MTN ? GO:0005509 ... P06129 21894979
    40 3rgn:A (2.3) BS07 MTN ? GO:0005509 ... P06129 21894979
    41 3stz:C (2.5) BS01 MTN ? GO:0005249 ... P0A334 22771214
    42 3v3x:C (2.0) BS01 MTN ? GO:0005618 ... P19909 22809334
    43 3v3x:C (2.0) BS02 MTN ? GO:0005618 ... P19909 22809334
    44 3v3x:D (2.0) BS01 MTN ? GO:0005618 ... P19909 22809334
    45 4ek1:A (1.97) BS03 MTN 1.14.15.1 GO:0004497 ... P00183 22826259
    46 4ek1:A (1.97) BS04 MTN 1.14.15.1 GO:0004497 ... P00183 22826259
    47 4ek1:B (1.97) BS01 MTN 1.14.15.1 GO:0004497 ... P00183 22826259
    48 4ek1:B (1.97) BS04 MTN 1.14.15.1 GO:0004497 ... P00183 22826259
    49 4wwl:A (2.23) BS01 MTN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 N/A
    50 5bmg:A (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    51 5bmg:B (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    52 5bmg:D (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    53 5bmg:E (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    54 5bmg:F (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    55 5bmg:G (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    56 5bmg:H (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    57 5bmh:A (1.6) BS01 MTN ? GO:0005618 ... P19909 26948069
    58 5g27:A (1.61) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 27673570
    59 5jdt:A (1.0) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 27673570
    60 5uui:A (1.4) BS01 MTN ? GO:0005164 ... P01375 28746848
    61 6n87:A (1.588) BS02 MTN ? GO:0016020 ... Q1PBJ5 30653832
    62 6pgy:A (2.0) BS01 MTN 3.2.1.17 GO:0003796 ... D9IEF7 N/A
    63 6pgz:A (2.0) BS01 MTN 3.2.1.17 GO:0003796 ... D9IEF7 N/A
    64 6pgz:B (2.0) BS01 MTN 3.2.1.17 GO:0003796 ... D9IEF7 N/A
    65 6pgz:B (2.0) BS02 MTN 3.2.1.17 GO:0003796 ... D9IEF7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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