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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ue7:H (1.129) BS03 MRZ 3.4.21.5 GO:0004252 ... P00734 26270568 MOAD: Kd=107uM
    BindingDB: Ki=150nM, Kd=107000nM
    2 4x0w:U (2.1) BS02 MRZ 3.4.21.73 GO:0004252 ... P00749 25744057
    3 4x1n:U (1.8) BS02 MRZ 3.4.21.73 GO:0004252 ... P00749 25545505
    4 4x1p:U (1.6) BS02 MRZ 3.4.21.73 GO:0004252 ... P00749 25744057
    5 4x1s:U (1.9) BS02 MRZ 3.4.21.73 GO:0004252 ... P00749 25545505
    6 4zhm:U (1.9) BS02 MRZ 3.4.21.73 GO:0004252 ... P00749 26281711
    7 5f8t:A (1.75) BS02 MRZ 3.4.21.34 GO:0004252 ... P03952 N/A
    8 5f8x:A (1.55) BS02 MRZ 3.4.21.34 GO:0004252 ... P03952 N/A
    9 5f8z:A (1.5) BS02 MRZ 3.4.21.34 GO:0004252 ... P03952 N/A
    10 5mnn:A (0.859) BS02 MRZ 3.4.21.4 GO:0004175 ... P00760 30177695 PDBbind: -logKd/Ki=3.84, Kd=143uM
    BindingDB: Ki=360nM
    11 5mno:A (0.96) BS02 MRZ 3.4.21.4 GO:0004175 ... P00760 30177695 MOAD: Kd=143uM
    PDBbind: -logKd/Ki=3.84, Kd=143uM
    BindingDB: Ki=360nM
    12 5mnp:A (1.01) BS02 MRZ 3.4.21.4 GO:0004175 ... P00760 N/A BindingDB: Ki=360nM
    13 5rpk:A (1.78) BS01 MRZ 3.4.21.64 GO:0004252 ... P06873 34076593
    14 6a8o:B (2.77) BS02 MRZ 3.4.21.34 GO:0004252 ... P26262 30019481
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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