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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1t7l:A (2.0) BS01 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    2 1t7l:B (2.0) BS01 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    3 1xdj:A (2.2) BS02 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    4 1xdj:B (2.2) BS02 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    5 1xpg:A (2.59) BS03 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    6 1xpg:B (2.59) BS02 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    7 1xr2:A (2.35) BS02 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    8 1xr2:B (2.35) BS01 MRY 2.1.1.14 GO:0003871 ... Q9X112 15630480
    9 3fst:C (1.65) BS02 MRY 1.5.1.54 GO:0004489 ... P0AEZ1 19610625
    10 3fsu:C (1.7) BS02 MRY 1.5.1.54 GO:0004489 ... P0AEZ1 19610625
    11 3lqf:A (1.8) BS02 MRY 1.1.1.406 GO:0000166 ... C0KTJ6 20410293
    12 3lqf:B (1.8) BS02 MRY 1.1.1.406 GO:0000166 ... C0KTJ6 20410293
    13 3lqf:C (1.8) BS02 MRY 1.1.1.406 GO:0000166 ... C0KTJ6 20410293
    14 3nw8:A (2.75915) BS01 MRY ? N/A P06437 20943984
    15 3nw8:A (2.75915) BS02 MRY ? N/A P06437 20943984
    16 3nw8:A (2.75915) BS03 MRY ? N/A P06437 20943984
    17 3nw8:A (2.75915) BS04 MRY ? N/A P06437 20943984
    18 3nw8:B (2.75915) BS01 MRY ? N/A P06437 20943984
    19 3nw8:B (2.75915) BS02 MRY ? N/A P06437 20943984
    20 3nw8:B (2.75915) BS03 MRY ? N/A P06437 20943984
    21 3nw8:C (2.75915) BS01 MRY ? N/A P06437 20943984
    22 3nw8:C (2.75915) BS02 MRY ? N/A P06437 20943984
    23 3nwa:A (2.2629) BS01 MRY ? N/A P06437 20943984
    24 3nwa:B (2.2629) BS01 MRY ? N/A P06437 20943984
    25 3nwa:C (2.2629) BS01 MRY ? N/A P06437 20943984
    26 3nwa:D (2.2629) BS01 MRY ? N/A P06437 20943984
    27 3nwd:C (2.8803) BS01 MRY ? N/A P06437 20943984
    28 3nwf:A (3.0) BS01 MRY ? N/A P06437 20943984
    29 3nwf:B (3.0) BS01 MRY ? N/A P06437 20943984
    30 3pym:A (2.0) BS02 MRY 1.2.1.12 GO:0003723 ... P00359 N/A
    31 3pym:B (2.0) BS02 MRY 1.2.1.12 GO:0003723 ... P00359 N/A
    32 4hsi:C (3.101) BS01 MRY ? N/A P06437 23500487
    33 5euk:C (2.5) BS02 MRY N/A N/A N/A 27834791
    34 5hhf:A (2.3) BS01 MRY 5.4.99.9 GO:0000166 ... Q4W1X2 26836146
    35 5hhf:B (2.3) BS01 MRY 5.4.99.9 GO:0000166 ... Q4W1X2 26836146
    36 5hhf:C (2.3) BS01 MRY 5.4.99.9 GO:0000166 ... Q4W1X2 26836146
    37 5hhf:D (2.3) BS01 MRY 5.4.99.9 GO:0000166 ... Q4W1X2 26836146
    38 5t1k:C (2.48) BS02 MRY N/A N/A N/A 27834791
    39 5u3d:A (1.77) BS01 MRY N/A N/A N/A N/A
    40 5u5f:B (1.81) BS02 MRY N/A N/A N/A N/A
    41 5u5m:B (1.88) BS02 MRY N/A N/A N/A N/A
    42 5u6a:B (1.736) BS02 MRY N/A N/A N/A N/A
    43 7c64:A (1.63) BS01 MRY ? GO:0015768 ... Q53W80 32866452
    44 7c64:B (1.63) BS01 MRY ? GO:0015768 ... Q53W80 32866452
    45 8u2m:A (1.79) BS03 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    46 8u2m:B (1.79) BS01 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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