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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jr1:A (2.6) BS02 MOA 1.1.1.205 GO:0000166 ... P12269 8681386 PDBbind: -logKd/Ki=8.22, Ki=6nM
    2 1jr1:B (2.6) BS02 MOA 1.1.1.205 GO:0000166 ... P12269 8681386
    3 1me7:A (2.15) BS02 MOA 1.1.1.205 GO:0000166 ... P50097 12235158
    4 1meh:A (1.95) BS03 MOA 1.1.1.205 GO:0000166 ... P50097 12559919
    5 1mei:A (2.2) BS03 MOA 1.1.1.205 GO:0000166 ... P50097 12559919
    6 4af0:A (2.2) BS01 MOA 1.1.1.205 GO:0000166 ... E3P6S0 23071437 MOAD: Ki=198nM
    7 4af0:B (2.2) BS01 MOA 1.1.1.205 GO:0000166 ... E3P6S0 23071437 MOAD: Ki=198nM
    8 4fo4:A (2.03) BS02 MOA 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    9 4fo4:B (2.03) BS02 MOA 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    10 4fxs:A (2.24) BS02 MOA 1.1.1.205 GO:0000166 ... Q9KTW3 N/A
    11 7dbl:A (1.84) BS01 MOA 3.1.1.- GO:0005777 ... A0A0B5LB55 33843134
    12 7dbl:B (1.84) BS01 MOA 3.1.1.- GO:0005777 ... A0A0B5LB55 33843134
    13 7dbl:C (1.84) BS01 MOA 3.1.1.- GO:0005777 ... A0A0B5LB55 33843134
    14 7dbl:D (1.84) BS01 MOA 3.1.1.- GO:0005777 ... A0A0B5LB55 33843134
    15 7wkz:A (2.992) BS02 MOA ? GO:0003677 ... P02768 36538495
    16 7wkz:B (2.992) BS02 MOA ? GO:0003677 ... P02768 36538495
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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