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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hge:A (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.27, Kd=5.4mM
    2 1hge:C (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    3 1hge:E (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    4 1hgh:A (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    5 1hgh:A (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    6 1hgh:B (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    7 1hgh:C (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    8 1hgh:C (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    9 1hgh:D (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    10 1hgh:E (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11 1hgh:E (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    12 1hgh:F (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    13 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    14 2i2s:A (2.3) BS01 MNA ? GO:0019028 ... P0C6Y8 17306299
    15 2i2s:A (2.3) BS02 MNA ? GO:0019028 ... P0C6Y8 17306299
    16 2i2s:B (2.3) BS01 MNA ? GO:0019028 ... P0C6Y8 17306299
    17 2i2s:B (2.3) BS02 MNA ? GO:0019028 ... P0C6Y8 17306299
    18 2p3i:A (1.75) BS01 MNA ? GO:0019028 ... P12473 18974199 MOAD: Kd=0.33mM
    PDBbind: -logKd/Ki=3.48, Kd=0.33mM
    19 2p3j:A (1.9) BS01 MNA ? GO:0019028 ... P12473 18974199
    20 2p3k:A (1.56) BS01 MNA ? GO:0019028 ... P12473 18974199
    21 4xl8:A (1.65) BS01 MNA ? GO:0007155 ... A0MK70 25674795
    22 4xl8:C (1.65) BS01 MNA ? GO:0007155 ... A0MK70 25674795
    23 6y66:AAA (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    24 6y66:BBB (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    25 6y66:CCC (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    26 6y66:DDD (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    27 6y66:EEE (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    28 6y66:FFF (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    29 6y66:GGG (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    30 6y66:HHH (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    31 6y66:III (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    32 6y66:JJJ (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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