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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 2jlf:A (3.2) BS01 MN 2.7.7.48 GO:0000166 ... P11124 18940872
    2802 2jlf:B (3.2) BS01 MN 2.7.7.48 GO:0000166 ... P11124 18940872
    2803 2jlg:C (2.8) BS04 MN 2.7.7.48 GO:0000166 ... P11124 18940872
    2804 2jlr:A (2.0) BS01 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q2YHF0 19008861
    2805 2jls:A (2.23) BS01 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q2YHF0 19008861
    2806 2lal:A (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    2807 2lal:C (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    2808 2lgs:A (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2809 2lgs:A (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2810 2lgs:B (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2811 2lgs:B (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2812 2lgs:C (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2813 2lgs:C (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2814 2lgs:D (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2815 2lgs:D (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2816 2lgs:E (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2817 2lgs:E (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2818 2lgs:F (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2819 2lgs:F (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2820 2lgs:G (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2821 2lgs:G (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2822 2lgs:H (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2823 2lgs:H (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2824 2lgs:I (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2825 2lgs:I (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2826 2lgs:J (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2827 2lgs:J (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2828 2lgs:K (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2829 2lgs:K (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2830 2lgs:L (2.8) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2831 2lgs:L (2.8) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 8099447
    2832 2ltn:A (1.7) BS01 MN ? GO:0030246 ... P02867 2708344
    2833 2ltn:C (1.7) BS01 MN ? GO:0030246 ... P02867 2708344
    2834 2mnr:A (1.9) BS01 MN 5.1.2.2 GO:0000287 ... P11444 1892834
    2835 2muc:A (2.3) BS01 MN 5.5.1.1 GO:0003824 ... P08310 10336378
    2836 2muc:B (2.3) BS01 MN 5.5.1.1 GO:0003824 ... P08310 10336378
    2837 2npp:C (3.3) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2838 2npp:C (3.3) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2839 2npp:F (3.3) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2840 2npp:F (3.3) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2841 2ns6:A (2.1) BS01 MN 3.6.1.- GO:0046872 ... D0VWX2 17157875
    2842 2ns6:A (2.1) BS02 MN 3.6.1.- GO:0046872 ... D0VWX2 17157875
    2843 2ns6:A (2.1) BS03 MN 3.6.1.- GO:0046872 ... D0VWX2 17157875
    2844 2nvy:A (3.4) BS03 MN 2.7.7.6 GO:0000428 ... P04050 17129781
    2845 2nyl:C (3.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2846 2nyl:C (3.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2847 2nyl:F (3.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2848 2nyl:F (3.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2849 2nym:C (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2850 2nym:C (3.6) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2851 2nym:F (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2852 2nym:F (3.6) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    2853 2o14:A (2.1) BS01 MN 3.1.-.- GO:0016787 ... P42304 N/A
    2854 2o1e:A (2.6) BS01 MN ? GO:0005886 ... O34966 N/A
    2855 2o1e:B (2.6) BS01 MN ? GO:0005886 ... O34966 N/A
    2856 2o1h:A (1.67) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 17259183
    2857 2o5a:A (2.7) BS01 MN ? GO:0005737 ... Q9KD89 N/A
    2858 2o8g:A (2.5) BS01 MN 3.1.3.16 GO:0000775 ... P63088 17636256
    2859 2o8g:B (2.5) BS01 MN 3.1.3.16 GO:0000775 ... P63088 17636256
    2860 2ocg:A (1.75) BS01 MN 3.1.-.- GO:0005739 ... Q86WA6 18256025
    2861 2oci:A (1.9) BS01 MN 3.1.-.- GO:0005739 ... Q86WA6 18256025
    2862 2ock:A (1.85) BS01 MN 3.1.-.- GO:0005739 ... Q86WA6 18256025
    2863 2ocl:A (1.9) BS01 MN 3.1.-.- GO:0005739 ... Q86WA6 18256025
    2864 2ojw:A (2.05) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2865 2ojw:A (2.05) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2866 2ojw:A (2.05) BS03 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2867 2ojw:B (2.05) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2868 2ojw:B (2.05) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2869 2ojw:B (2.05) BS03 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2870 2ojw:C (2.05) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2871 2ojw:C (2.05) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2872 2ojw:C (2.05) BS03 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2873 2ojw:D (2.05) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2874 2ojw:D (2.05) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2875 2ojw:D (2.05) BS03 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2876 2ojw:E (2.05) BS01 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2877 2ojw:E (2.05) BS02 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2878 2ojw:E (2.05) BS03 MN 2.3.1.225
    6.3.1.2
    GO:0001525 ... P15104 18005987
    2879 2okn:A (2.45) BS01 MN 3.4.13.9 GO:0004181 ... P12955 N/A
    2880 2okn:A (2.45) BS02 MN 3.4.13.9 GO:0004181 ... P12955 N/A
    2881 2okn:B (2.45) BS01 MN 3.4.13.9 GO:0004181 ... P12955 N/A
    2882 2okn:B (2.45) BS02 MN 3.4.13.9 GO:0004181 ... P12955 N/A
    2883 2olq:A (1.94) BS01 MN 4.1.1.49 GO:0000287 ... P22259 17475535
    2884 2ong:A (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    2885 2ong:A (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    2886 2ong:A (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    2887 2ong:B (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    2888 2ong:B (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    2889 2ong:B (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    2890 2onh:A (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    2891 2onh:A (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    2892 2onh:A (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    2893 2onh:B (2.7) BS01 MN ? GO:0000287 ... Q40322 17372193
    2894 2onh:B (2.7) BS02 MN ? GO:0000287 ... Q40322 17372193
    2895 2onh:B (2.7) BS03 MN ? GO:0000287 ... Q40322 17372193
    2896 2ou4:A (2.5) BS01 MN 5.1.3.31 GO:0016853 ... O50580 17936787
    2897 2ou4:B (2.5) BS01 MN 5.1.3.31 GO:0016853 ... O50580 17936787
    2898 2ou4:C (2.5) BS01 MN 5.1.3.31 GO:0016853 ... O50580 17936787
    2899 2ou4:D (2.5) BS01 MN 5.1.3.31 GO:0016853 ... O50580 17936787
    2900 2ovu:A (1.5) BS04 MN ? GO:0030246 ... P14894 17881248
    2901 2ow4:A (1.6) BS04 MN ? GO:0030246 ... P81364 17881248
    2902 2p0n:A (1.41) BS01 MN ? GO:0046872 ... Q9JYL1 N/A
    2903 2p0n:A (1.41) BS02 MN ? GO:0046872 ... Q9JYL1 N/A
    2904 2p0n:B (1.41) BS01 MN ? GO:0046872 ... Q9JYL1 N/A
    2905 2p0n:B (1.41) BS02 MN ? GO:0046872 ... Q9JYL1 N/A
    2906 2p2k:A (1.98) BS02 MN ? GO:0030246 ... P14894 17881248
    2907 2p2k:B (1.98) BS02 MN ? GO:0030246 ... P14894 17881248
    2908 2p2k:C (1.98) BS02 MN ? GO:0030246 ... P14894 17881248
    2909 2p2k:D (1.98) BS02 MN ? GO:0030246 ... P14894 17881248
    2910 2p34:A (2.1) BS02 MN ? GO:0030246 ... P81364 17881248
    2911 2p34:B (2.1) BS02 MN ? GO:0030246 ... P81364 17881248
    2912 2p34:C (2.1) BS02 MN ? GO:0030246 ... P81364 17881248
    2913 2p34:D (2.1) BS02 MN ? GO:0030246 ... P81364 17881248
    2914 2p37:A (2.1) BS03 MN ? GO:0030246 ... P81364 17881248
    2915 2p37:B (2.1) BS03 MN ? GO:0030246 ... P81364 17881248
    2916 2p37:C (2.1) BS03 MN ? GO:0030246 ... P81364 17881248
    2917 2p37:D (2.1) BS03 MN ? GO:0030246 ... P81364 17881248
    2918 2p4k:A (1.48) BS01 MN 1.15.1.1 GO:0004784 ... P04179 19265433
    2919 2p4k:B (1.48) BS01 MN 1.15.1.1 GO:0004784 ... P04179 19265433
    2920 2p4k:C (1.48) BS01 MN 1.15.1.1 GO:0004784 ... P04179 19265433
    2921 2p4k:D (1.48) BS01 MN 1.15.1.1 GO:0004784 ... P04179 19265433
    2922 2p6w:A (1.6) BS01 MN ? GO:0016020 ... Q89399 17850743
    2923 2p72:A (2.0) BS01 MN ? GO:0016020 ... Q89399 17850743
    2924 2p72:B (2.0) BS01 MN ? GO:0016020 ... Q89399 17850743
    2925 2p73:A (2.3) BS01 MN ? GO:0016020 ... Q89399 17850743
    2926 2p7o:A (1.44) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2927 2p7o:B (1.44) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2928 2p7p:A (2.17) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2929 2p7p:B (2.17) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2930 2p7p:C (2.17) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2931 2p7p:D (2.17) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2932 2p7p:E (2.17) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2933 2p7p:F (2.17) BS01 MN ? GO:0005737 ... Q8Y6I2 17567049
    2934 2p7q:A (2.4) BS01 MN N/A N/A N/A 17567049
    2935 2p7q:B (2.4) BS02 MN N/A N/A N/A 17567049
    2936 2p7q:C (2.4) BS01 MN N/A N/A N/A 17567049
    2937 2p7q:D (2.4) BS01 MN N/A N/A N/A 17567049
    2938 2p7q:E (2.4) BS01 MN N/A N/A N/A 17567049
    2939 2p7q:F (2.4) BS01 MN N/A N/A N/A 17567049
    2940 2p98:A (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 17948983
    2941 2p99:A (1.8) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 17948983
    2942 2p9a:A (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 17948983
    2943 2p9a:A (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 17948983
    2944 2pal:A (1.8) BS01 MN ? GO:0005509 ... P02619 1880797
    2945 2pal:A (1.8) BS02 MN ? GO:0005509 ... P02619 1880797
    2946 2pal:A (1.8) BS03 MN ? GO:0005509 ... P02619 1880797
    2947 2pel:A (2.25) BS04 MN ? GO:0030246 ... P02872 8656429
    2948 2pel:B (2.25) BS03 MN ? GO:0030246 ... P02872 8656429
    2949 2pel:C (2.25) BS04 MN ? GO:0030246 ... P02872 8656429
    2950 2pel:D (2.25) BS03 MN ? GO:0030246 ... P02872 8656429
    2951 2pfo:A (2.0) BS05 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 17475573
    2952 2pfq:A (2.1) BS05 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 17475573
    2953 2pfq:A (2.1) BS06 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 17475573
    2954 2pha:A (1.9) BS01 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2955 2pha:A (1.9) BS02 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2956 2pha:B (1.9) BS01 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2957 2pha:B (1.9) BS02 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2958 2phf:A (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 17556509
    2959 2phf:B (2.1) BS04 MN ? GO:0030246 ... Q8GSD2 17556509
    2960 2phk:A (2.6) BS02 MN 2.7.11.1
    2.7.11.19
    2.7.11.26
    GO:0004672 ... P00518 9362479
    2961 2phn:A (1.35) BS01 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 17669425
    2962 2phn:A (1.35) BS02 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 17669425
    2963 2phn:B (1.35) BS01 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 17669425
    2964 2phn:B (1.35) BS02 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 17669425
    2965 2pho:A (1.95) BS01 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2966 2pho:A (1.95) BS02 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2967 2pho:B (1.95) BS01 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2968 2pho:B (1.95) BS02 MN 3.5.3.1 GO:0000050 ... P05089 17469833
    2969 2phr:A (1.9) BS03 MN ? GO:0030246 ... Q8GSD2 17556509
    2970 2phr:B (1.9) BS04 MN ? GO:0030246 ... Q8GSD2 17556509
    2971 2pht:A (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 17556509
    2972 2pht:B (2.1) BS05 MN ? GO:0030246 ... Q8GSD2 17556509
    2973 2phu:A (2.2) BS02 MN ? GO:0030246 ... Q8GSD2 17556509
    2974 2phu:B (2.2) BS06 MN ? GO:0030246 ... Q8GSD2 17556509
    2975 2phw:A (1.8) BS03 MN ? GO:0030246 ... Q8GSD2 17556509
    2976 2phw:B (1.8) BS05 MN ? GO:0030246 ... Q8GSD2 17556509
    2977 2phx:A (1.8) BS03 MN ? GO:0030246 ... Q8GSD2 17556509
    2978 2phx:B (1.8) BS04 MN ? GO:0030246 ... Q8GSD2 17556509
    2979 2pll:A (1.9) BS01 MN 3.5.3.1 GO:0000050 ... P05089 17562323
    2980 2pll:A (1.9) BS02 MN 3.5.3.1 GO:0000050 ... P05089 17562323
    2981 2pll:B (1.9) BS01 MN 3.5.3.1 GO:0000050 ... P05089 17562323
    2982 2pll:B (1.9) BS02 MN 3.5.3.1 GO:0000050 ... P05089 17562323
    2983 2pml:X (2.6) BS01 MN 2.7.12.2 GO:0000165 ... O96214 N/A
    2984 2pny:A (1.81) BS02 MN 5.3.3.2 GO:0004452 ... Q9BXS1 N/A
    2985 2pok:A (1.9) BS03 MN ? GO:0005829 ... A0A0H2UN21 N/A
    2986 2pok:B (1.9) BS03 MN ? GO:0005829 ... A0A0H2UN21 N/A
    2987 2pom:A (2.27) BS01 MN ? GO:0004722 ... Q15750 17560374
    2988 2pxz:X (2.23) BS01 MN 4.1.1.49 GO:0000287 ... P22259 N/A
    2989 2py7:X (2.2) BS01 MN 4.1.1.49 GO:0000287 ... P22259 N/A
    2990 2py7:X (2.2) BS02 MN 4.1.1.49 GO:0000287 ... P22259 N/A
    2991 2pyj:A (2.03) BS03 MN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P03680 17611604
    2992 2pyj:B (2.03) BS06 MN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P03680 17611604
    2993 2q7d:A (1.6) BS01 MN 2.7.1.134
    2.7.1.159
    GO:0000287 ... Q13572 17616525
    2994 2q7d:A (1.6) BS02 MN 2.7.1.134
    2.7.1.159
    GO:0000287 ... Q13572 17616525
    2995 2q7d:B (1.6) BS01 MN 2.7.1.134
    2.7.1.159
    GO:0000287 ... Q13572 17616525
    2996 2q7d:B (1.6) BS02 MN 2.7.1.134
    2.7.1.159
    GO:0000287 ... Q13572 17616525
    2997 2q92:A (1.9) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 18093325
    2998 2q92:A (1.9) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 18093325
    2999 2q93:A (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 18093325
    3000 2q93:A (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 18093325

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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