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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2byr:A (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    PDBbind: -logKd/Ki=8.55, Kd=2.8nM
    2 2byr:A (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    PDBbind: -logKd/Ki=8.55, Kd=2.8nM
    3 2byr:B (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    4 2byr:B (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    5 2byr:C (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    6 2byr:D (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    7 2byr:E (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    PDBbind: -logKd/Ki=8.55, Kd=2.8nM
    8 2byr:E (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    PDBbind: -logKd/Ki=8.55, Kd=2.8nM
    9 2byr:F (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    10 2byr:F (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    11 2byr:G (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    12 2byr:G (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    13 2byr:H (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    14 2byr:H (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    15 2byr:I (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    16 2byr:I (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    17 2byr:J (2.45) BS01 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    18 2byr:J (2.45) BS02 MLK ? GO:0004888 ... Q8WSF8 16193063 MOAD: Kd=2.8nM
    19 3sh1:A (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=7.39, Ki=41nM
    20 3sh1:A (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=7.39, Ki=41nM
    21 3sh1:B (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    22 3sh1:B (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    23 3sh1:C (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    24 3sh1:C (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    25 3sh1:D (2.9) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    26 3sh1:D (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    27 3sh1:E (2.9) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=7.39, Ki=41nM
    28 3sh1:E (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=7.39, Ki=41nM
    29 3sh1:F (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    30 3sh1:F (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    31 3sh1:G (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    32 3sh1:G (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    33 3sh1:H (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    34 3sh1:H (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    35 3sh1:I (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    36 3sh1:I (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    37 3sh1:J (2.9) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    38 3sh1:J (2.9) BS03 MLK ? GO:0004888 ... Q8WSF8 22009746
    39 3sio:A (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=8.00, Ki=10nM
    40 3sio:A (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=8.00, Ki=10nM
    41 3sio:B (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    42 3sio:B (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    43 3sio:C (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    44 3sio:C (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    45 3sio:D (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    46 3sio:D (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    47 3sio:E (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=8.00, Ki=10nM
    48 3sio:E (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746 PDBbind: -logKd/Ki=8.00, Ki=10nM
    49 3sio:F (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    50 3sio:F (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    51 3sio:G (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    52 3sio:G (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    53 3sio:H (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    54 3sio:H (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    55 3sio:I (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    56 3sio:I (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    57 3sio:J (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    58 3sio:J (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    59 4uxu:A (1.71) BS01 MLK ? GO:0004888 ... Q9UGM1 25282151
    60 4uxu:B (1.71) BS01 MLK ? GO:0004888 ... Q9UGM1 25282151
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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